Gene omics information

Query gene ID	Ptp.3518.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	Ptp.3518.1.A1_at	DN492409	-	-	1e+0	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.7770.2.S1_at	DN488472	-	-	6e+0	At4g12090	cornichon family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.83	97.0	PtpAffx.216324.1.S1_x_at	pmrna31034	hypothetical protein	-	4e+0	At4g05553	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	Ptp.3447.1.A1_at	DN492951	-	-	2e+0	At3g06000	leucine-rich repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.144822.1.S1_at	DN500556	-	-	1e+0	At5g66650	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.214797.1.S1_at	pmrna28647	hypothetical protein	-	3e-34	At5g13650	elongation factor family protein	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.4	100.0	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
25.4	99.9	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
14.6	99.5	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.0	97.5	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.3	81.0	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.7	69.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.6	66.6	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.4	59.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
0.3	55.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-12	73	PtpAffx.225900.1.S1_x_at	pmrna45547	hypothetical protein	-	1e+0	At2g18876	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	5e-4	46	PtpAffx.225293.1.S1_at	pmrna44536	hypothetical protein	-	5e-1	At1g63410	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-3	44	PtpAffx.211290.1.S1_at	pmrna22141	hypothetical protein	-	1e+0	At5g67620	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	3e-2	40	Ptp.8001.1.S1_at	DN493130	-	-	1e-1	At1g09230	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-1	38	PtpAffx.225901.1.S1_at	pmrna45548	hypothetical protein	-	1e-1	At5g36200	F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-1	36	PtpAffx.225464.1.S1_at	pmrna44826	hypothetical protein	-	7e+0	At5g65590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-1	36	PtpAffx.225464.1.S1_x_at	pmrna44826	hypothetical protein	-	7e+0	At5g65590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	36	PtpAffx.200712.1.S1_at	pmrna1373	hypothetical protein	-	9e-2	At1g65160	ubiquitin carboxyl-terminal hydrolase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	PtpAffx.15327.2.A1_at	BP931895	hypothetical protein	-	4e-1	At2g18020	EMB2296 (embryo defective 2296)	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At4g01895	827073	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.56389.1.S1_at	BU927476	-	-	3e+0	At5g03770	3-deoxy-D-manno-octulosonic acid transferase-related	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HVSMEb0005E16r2_at	HVSMEb0005E16r2	-	-	1e+0	At1g14290	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.20948.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Triticum aestivum	Ta.11271.1.A1_at	BQ169744	-	-	5e-1	At5g10400	histone H3	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1612297_at	CA812105	hypothetical protein LOC100244787	-	2e-2	At5g12410	THUMP domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.3006.1.A1_a_at	BG873873	-	-	2e-2	At3g21352	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage