Gene omics information

Query gene ID Ptp.3518.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7794.9Ptp.3518.1.A1_atDN492409--1e+0At4g01895systemic acquired resistance (SAR) regulator protein NIMIN-1-relatedS.X.H.G.
0.9199.2PtpAffx.7770.2.S1_atDN488472--6e+0At4g12090cornichon family proteinS.X.H.G.
0.8397.0PtpAffx.216324.1.S1_x_atpmrna31034hypothetical protein-4e+0At4g05553zinc knuckle (CCHC-type) family proteinS.X.H.G.
0.7794.9Ptp.3447.1.A1_atDN492951--2e+0At3g06000leucine-rich repeat family proteinS.X.H.G.
0.6388.1PtpAffx.144822.1.S1_atDN500556--1e+0At5g66650unknown proteinS.X.H.G.
0.4774.6PtpAffx.214797.1.S1_atpmrna28647hypothetical protein-3e-34At5g13650elongation factor family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
39.4100.0GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
25.499.9GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
14.699.5GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
6.097.5GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.389.8GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
1.381.0GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
0.769.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
0.666.6GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
0.459.5GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
0.355.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e-1273PtpAffx.225900.1.S1_x_atpmrna45547hypothetical protein-1e+0At2g18876unknown proteinC.G.S.X.
0.045e-446PtpAffx.225293.1.S1_atpmrna44536hypothetical protein-5e-1At1g63410unknown proteinC.G.S.X.
0.042e-344PtpAffx.211290.1.S1_atpmrna22141hypothetical protein-1e+0At5g67620unknown proteinC.G.S.X.
0.083e-240Ptp.8001.1.S1_atDN493130--1e-1At1g09230RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.041e-138PtpAffx.225901.1.S1_atpmrna45548hypothetical protein-1e-1At5g36200F-box family proteinC.G.S.X.
0.054e-136PtpAffx.225464.1.S1_atpmrna44826hypothetical protein-7e+0At5g65590Dof-type zinc finger domain-containing proteinC.G.S.X.
0.054e-136PtpAffx.225464.1.S1_x_atpmrna44826hypothetical protein-7e+0At5g65590Dof-type zinc finger domain-containing proteinC.G.S.X.
0.014e-136PtpAffx.200712.1.S1_atpmrna1373hypothetical protein-9e-2At1g65160ubiquitin carboxyl-terminal hydrolase family proteinC.G.S.X.
0.024e-136PtpAffx.15327.2.A1_atBP931895hypothetical protein-4e-1At2g18020EMB2296 (embryo defective 2296)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e+034Arabidopsis thalianaAt4g01895827073systemic acquired resistance (SAR) regulator protein NIMIN-1-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA---C.G.S.X.
0.042e+034Glycine maxGmaAffx.56389.1.S1_atBU927476--3e+0At5g037703-deoxy-D-manno-octulosonic acid transferase-relatedC.G.S.X.
0.032e+032Hordeum vulgareHVSMEb0005E16r2_atHVSMEb0005E16r2--1e+0At1g14290SBH2 (SPHINGOID BASE HYDROXYLASE 2)C.G.S.X.
0.033e+034Oryza sativaOsAffx.20948.1.S1_at---0C.G.S.X.
0.035e+032Triticum aestivumTa.11271.1.A1_atBQ169744--5e-1At5g10400histone H3C.G.S.X.
0.036e+030Vitis vinifera1612297_atCA812105hypothetical protein LOC100244787-2e-2At5g12410THUMP domain-containing proteinC.G.S.X.
0.022e+032Zea maysZm.3006.1.A1_a_atBG873873--2e-2At3g21352unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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