CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3447.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 Ptp.3447.1.A1_at DN492951 - - 2e+0 At3g06000 leucine-rich repeat family protein S.X. H.G.
0.90 97.9 PtpAffx.224460.1.S1_x_at pmrna43015 hypothetical protein - 6e-1 At2g38780 unknown protein S.X. H.G.
0.90 97.9 PtpAffx.225048.1.S1_at pmrna44125 hypothetical protein - 2e-1 At1g48980 oxidoreductase S.X. H.G.
0.90 97.9 PtpAffx.7770.1.A1_at CA934754 - - 4e+0 At1g58460 unknown protein S.X. H.G.
0.87 97.5 PtpAffx.13927.1.S1_at CX660204 hypothetical protein - 2e-6 At5g19300 - S.X. H.G.
0.87 97.5 PtpAffx.144822.1.S1_at DN500556 - - 1e+0 At5g66650 unknown protein S.X. H.G.
0.87 97.5 PtpAffx.220631.1.S1_at pmrna37041 hypothetical protein - 7e-1 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family S.X. H.G.
0.84 97.1 Ptp.7970.1.S1_at DN502791 - - 4e+0 At2g35070 unknown protein S.X. H.G.
0.79 95.3 PtpAffx.140514.1.A1_at CV255394 - - 2e-1 At1g13080 CYP71B2 (CYTOCHROME P450 71B2) S.X. H.G.
0.77 94.9 Ptp.7132.2.S1_at DN494473 - - 4e-1 At5g06710 HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
49.4 100.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
19.6 99.7 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
19.3 99.7 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.8 72.0 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.6 66.6 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.6 66.6 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.2 49.7 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
0.1 42.9 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.1 42.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 3e-15 81 PtpAffx.7770.2.S1_at DN488472 - - 6e+0 At4g12090 cornichon family protein C.G. S.X.
0.01 2e+0 32 PtpAffx.204666.1.S1_at pmrna9185 hypothetical protein - 7e-16 At3g19190 - C.G. S.X.
0.04 1e+1 30 PtpAffx.7696.4.S1_a_at CV245831 - - 9e-1 At1g04240 SHY2 (SHORT HYPOCOTYL 2) C.G. S.X.
0.02 1e+1 30 PtpAffx.7696.1.S1_at CV262235 hypothetical protein - 8e-25 At4g14560 IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE) C.G. S.X.
0.04 1e+1 30 PtpAffx.7696.4.S1_at CV245831 hypothetical protein - 9e-1 At1g04240 SHY2 (SHORT HYPOCOTYL 2) C.G. S.X.
0.03 1e+1 30 PtpAffx.43877.1.A1_at CV255188 hypothetical protein - 4e-38 At2g36250 FTSZ2-1 C.G. S.X.
0.03 1e+1 30 PtpAffx.3173.10.S1_a_at CV266631 hypothetical protein - 2e-9 At3g10260 reticulon family protein C.G. S.X.
0.01 1e+1 30 PtpAffx.223287.1.S1_at pmrna41209 hypothetical protein - 2e-24 At2g02480 STI (STICHEL) C.G. S.X.
0.01 1e+1 30 PtpAffx.223120.1.S1_at pmrna40957 hypothetical protein - 7e-19 At5g07970 dentin sialophosphoprotein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 32 Arabidopsis thaliana At3g06000 819771 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPF - - - C.G. S.X.
0.05 1e+1 30 Glycine max GmaAffx.19925.1.S1_at BE657749 - - 3e-1 At3g56790 RNA splicing factor-related C.G. S.X.
0.06 3e+0 30 Hordeum vulgare HV01L03w_at HV01L03w - - 8e+0 At5g26790 unknown protein C.G. S.X.
0.04 4e+0 32 Oryza sativa Os08g0488700 9636.m03836 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 1e+0 At1g03660 - C.G. S.X.
0.04 7e+0 30 Triticum aestivum TaAffx.81152.1.S1_at CA689112 - - 4e+0 At4g33870 peroxidase, putative C.G. S.X.
0.04 5e-1 32 Vitis vinifera 1615689_at CF371716 - - 4e+0 At2g02050 NADH-ubiquinone oxidoreductase B18 subunit, putative C.G. S.X.
0.03 1e+1 28 Zea mays Zm.5676.1.A1_at AY103939.1 - - 3e-1 At5g14710 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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