Gene omics information

Query gene ID Ptp.3447.1.A1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7192.6Ptp.3447.1.A1_atDN492951--2e+0At3g06000leucine-rich repeat family proteinS.X.H.G.
0.9097.9PtpAffx.224460.1.S1_x_atpmrna43015hypothetical protein-6e-1At2g38780unknown proteinS.X.H.G.
0.9097.9PtpAffx.225048.1.S1_atpmrna44125hypothetical protein-2e-1At1g48980oxidoreductaseS.X.H.G.
0.9097.9PtpAffx.7770.1.A1_atCA934754--4e+0At1g58460unknown proteinS.X.H.G.
0.8797.5PtpAffx.13927.1.S1_atCX660204hypothetical protein-2e-6At5g19300-S.X.H.G.
0.8797.5PtpAffx.144822.1.S1_atDN500556--1e+0At5g66650unknown proteinS.X.H.G.
0.8797.5PtpAffx.220631.1.S1_atpmrna37041hypothetical protein-7e-1At3g46940deoxyuridine 5'-triphosphate nucleotidohydrolase familyS.X.H.G.
0.8497.1Ptp.7970.1.S1_atDN502791--4e+0At2g35070unknown proteinS.X.H.G.
0.7995.3PtpAffx.140514.1.A1_atCV255394--2e-1At1g13080CYP71B2 (CYTOCHROME P450 71B2)S.X.H.G.
0.7794.9Ptp.7132.2.S1_atDN494473--4e-1At5g06710HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
49.4100.0GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
19.699.7GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
19.399.7GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
4.095.3GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
0.872.0GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
0.666.6GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
0.666.6GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
0.249.7GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
0.142.9GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
0.142.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.143e-1581PtpAffx.7770.2.S1_atDN488472--6e+0At4g12090cornichon family proteinC.G.S.X.
0.012e+032PtpAffx.204666.1.S1_atpmrna9185hypothetical protein-7e-16At3g19190-C.G.S.X.
0.041e+130PtpAffx.7696.4.S1_a_atCV245831--9e-1At1g04240SHY2 (SHORT HYPOCOTYL 2)C.G.S.X.
0.021e+130PtpAffx.7696.1.S1_atCV262235hypothetical protein-8e-25At4g14560IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)C.G.S.X.
0.041e+130PtpAffx.7696.4.S1_atCV245831hypothetical protein-9e-1At1g04240SHY2 (SHORT HYPOCOTYL 2)C.G.S.X.
0.031e+130PtpAffx.43877.1.A1_atCV255188hypothetical protein-4e-38At2g36250FTSZ2-1C.G.S.X.
0.031e+130PtpAffx.3173.10.S1_a_atCV266631hypothetical protein-2e-9At3g10260reticulon family proteinC.G.S.X.
0.011e+130PtpAffx.223287.1.S1_atpmrna41209hypothetical protein-2e-24At2g02480STI (STICHEL)C.G.S.X.
0.011e+130PtpAffx.223120.1.S1_atpmrna40957hypothetical protein-7e-19At5g07970dentin sialophosphoprotein-relatedC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e+032Arabidopsis thalianaAt3g06000819771leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPF---C.G.S.X.
0.051e+130Glycine maxGmaAffx.19925.1.S1_atBE657749--3e-1At3g56790RNA splicing factor-relatedC.G.S.X.
0.063e+030Hordeum vulgareHV01L03w_atHV01L03w--8e+0At5g26790unknown proteinC.G.S.X.
0.044e+032Oryza sativaOs08g04887009636.m03836-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein1e+0At1g03660-C.G.S.X.
0.047e+030Triticum aestivumTaAffx.81152.1.S1_atCA689112--4e+0At4g33870peroxidase, putativeC.G.S.X.
0.045e-132Vitis vinifera1615689_atCF371716--4e+0At2g02050NADH-ubiquinone oxidoreductase B18 subunit, putativeC.G.S.X.
0.031e+128Zea maysZm.5676.1.A1_atAY103939.1--3e-1At5g14710-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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