Gene omics information

Query gene ID Ptp.3445.1.S1_at
Gene name
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4067.0Ptp.3445.1.S1_atDN502972--1e+0At5g20910zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.5078.6PtpAffx.7785.4.A1_atCV265733hypothetical protein-1e-1At3g11820SYP121 (SYNTAXIN OF PLANTS 121)S.X.H.G.
0.2543.6Ptp.5235.1.S1_s_atCK110349hypothetical protein-1e+0At5g54950aconitate hydratase-related / citrate hydro-lyase-related / aconitase-relatedS.X.H.G.
0.1321.6PtpAffx.249.292.A1_atCV260437hypothetical protein-3e-2At2g47400CP12-1S.X.H.G.
0.1321.6PtpAffx.127631.1.A1_atCV250993bile acid:Na+ symporter family protein-2e+0At3g48590NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1)S.X.H.G.
0.1118.1PtpAffx.42296.1.A1_atBP931599hypothetical protein-6e-1At2g29460ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.499.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
8.898.7GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.396.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue series
4.495.9GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.995.1GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.791.8GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
2.490.4GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.188.6GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.886.4GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
1.886.4GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-138PtpAffx.75063.1.S1_atDN487936--4e-2At3g03020unknown proteinC.G.S.X.
0.011e-138PtpAffx.224917.1.S1_atpmrna43844BED finger-nbs-lrr resistance protein-6e-3At5g37710lipase class 3 family protein / calmodulin-binding heat-shock protein, putativeC.G.S.X.
0.021e-138PtpAffx.206938.1.S1_s_atpmrna13764hypothetical protein-1e-110At1g08450CRT3 (CALRETICULIN 3)C.G.S.X.
0.021e-138PtpAffx.206938.1.S1_atpmrna13764hypothetical protein-1e-110At1g08450CRT3 (CALRETICULIN 3)C.G.S.X.
0.014e-136PtpAffx.6610.1.A2_a_atCV263107hypothetical protein-3e-39At3g63450RNA binding / nucleic acid binding / nucleotide bindingC.G.S.X.
0.014e-136PtpAffx.6610.1.A1_a_atCV234438hypothetical protein-3e-39At3g63450RNA binding / nucleic acid binding / nucleotide bindingC.G.S.X.
0.014e-136PtpAffx.6610.1.A1_x_atCV234438hypothetical protein-3e-39At3g63450RNA binding / nucleic acid binding / nucleotide bindingC.G.S.X.
0.014e-136PtpAffx.6610.1.A1_atCV234438--3e-39At3g63450RNA binding / nucleic acid binding / nucleotide bindingC.G.S.X.
0.022e+034PtpAffx.56976.1.S1_atCV243489--2e-15At1g79590SYP52 (SYNTAXIN OF PLANTS 52)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+034Arabidopsis thalianaAt5g20910832215zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:nucleus;PMOFV---C.G.S.X.
0.042e+034Glycine maxGmaAffx.61222.1.S1_s_atBE803404--3e-1At2g38750ANNAT4 (ANNEXIN ARABIDOPSIS 4)C.G.S.X.
0.032e+032Hordeum vulgarerbaal9i05_atrbaal9i05--3e-1At3g55210anac063 (Arabidopsis NAC domain containing protein 63)C.G.S.X.
0.022e+034Oryza sativaOs01g0776700CR290397-Conserved hypothetical protein7e-3At3g44950glycine-rich proteinC.G.S.X.
0.031e+034Triticum aestivumTaAffx.86905.1.S1_atCA599101Small GTP-binding protein-4e+0At5g59613unknown proteinC.G.S.X.
0.041e+032Vitis vinifera1615410_atCF405475--2e+0At5g18760zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.038e+030Zea maysZmAffx.1400.1.S1_at40794996-75--3e+0At4g05631unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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