CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3445.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 67.0 Ptp.3445.1.S1_at DN502972 - - 1e+0 At5g20910 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.50 78.6 PtpAffx.7785.4.A1_at CV265733 hypothetical protein - 1e-1 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) S.X. H.G.
0.25 43.6 Ptp.5235.1.S1_s_at CK110349 hypothetical protein - 1e+0 At5g54950 aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related S.X. H.G.
0.13 21.6 PtpAffx.249.292.A1_at CV260437 hypothetical protein - 3e-2 At2g47400 CP12-1 S.X. H.G.
0.13 21.6 PtpAffx.127631.1.A1_at CV250993 bile acid:Na+ symporter family protein - 2e+0 At3g48590 NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1) S.X. H.G.
0.11 18.1 PtpAffx.42296.1.A1_at BP931599 hypothetical protein - 6e-1 At2g29460 ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.4 99.4 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
8.8 98.7 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3 96.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.4 95.9 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9 95.1 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7 91.8 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 38 PtpAffx.75063.1.S1_at DN487936 - - 4e-2 At3g03020 unknown protein C.G. S.X.
0.01 1e-1 38 PtpAffx.224917.1.S1_at pmrna43844 BED finger-nbs-lrr resistance protein - 6e-3 At5g37710 lipase class 3 family protein / calmodulin-binding heat-shock protein, putative C.G. S.X.
0.02 1e-1 38 PtpAffx.206938.1.S1_s_at pmrna13764 hypothetical protein - 1e-110 At1g08450 CRT3 (CALRETICULIN 3) C.G. S.X.
0.02 1e-1 38 PtpAffx.206938.1.S1_at pmrna13764 hypothetical protein - 1e-110 At1g08450 CRT3 (CALRETICULIN 3) C.G. S.X.
0.01 4e-1 36 PtpAffx.6610.1.A2_a_at CV263107 hypothetical protein - 3e-39 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 4e-1 36 PtpAffx.6610.1.A1_a_at CV234438 hypothetical protein - 3e-39 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 4e-1 36 PtpAffx.6610.1.A1_x_at CV234438 hypothetical protein - 3e-39 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.01 4e-1 36 PtpAffx.6610.1.A1_at CV234438 - - 3e-39 At3g63450 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.02 2e+0 34 PtpAffx.56976.1.S1_at CV243489 - - 2e-15 At1g79590 SYP52 (SYNTAXIN OF PLANTS 52) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At5g20910 832215 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:nucleus;PMOFV - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.61222.1.S1_s_at BE803404 - - 3e-1 At2g38750 ANNAT4 (ANNEXIN ARABIDOPSIS 4) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare rbaal9i05_at rbaal9i05 - - 3e-1 At3g55210 anac063 (Arabidopsis NAC domain containing protein 63) C.G. S.X.
0.02 2e+0 34 Oryza sativa Os01g0776700 CR290397 - Conserved hypothetical protein 7e-3 At3g44950 glycine-rich protein C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.86905.1.S1_at CA599101 Small GTP-binding protein - 4e+0 At5g59613 unknown protein C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1615410_at CF405475 - - 2e+0 At5g18760 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 8e+0 30 Zea mays ZmAffx.1400.1.S1_at 40794996-75 - - 3e+0 At4g05631 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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