Gene omics information

Query gene ID	Ptp.3407.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	Ptp.3407.1.S1_at	CK114637	-	-	3e+0	At2g21120	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	Ptp.1927.1.A1_at	CK093004	-	-	4e+0	At3g61190	BAP1 (BON ASSOCIATION PROTEIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.32943.1.A1_at	CK094854	hypothetical protein	-	7e-3	At3g61070	PEX11E	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.200468.1.S1_at	pmrna945	-	-	4e-1	At1g20100	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.213520.1.S1_at	pmrna26425	hypothetical protein	-	5e+0	At5g64470	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.220781.1.S1_at	pmrna37212	cytochrome P450	-	2e+0	At2g19850	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.33045.1.A1_at	CK089245	-	-	5e+0	At2g29045	LCR62 (Low-molecular-weight cysteine-rich 62)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.101690.1.A1_at	CV255238	-	-	9e-1	At5g41401	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.1	100.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.5	97.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.3	96.9	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.5	83.5	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	0	787	Ptp.3063.1.S1_s_at	AJ774412	-	-	4e+0	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	2e-88	327	Ptp.2688.1.S1_at	BU892076	-	-	7e+0	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	1e-39	165	PtpAffx.249.67.A1_at	CV240981	-	-	4e-12	At1g47710	serpin, putative / serine protease inhibitor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	5e-24	113	PtpAffx.249.339.S1_at	CV273575	-	-	3e+0	At3g23420	F-box family protein-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	5e-24	113	PtpAffx.249.326.S1_at	AJ768042	hypothetical protein	-	9e-35	At1g43860	transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-5	50	Ptp.7926.1.S1_at	CA821282	-	-	1e-73	Atmg00080	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-2	40	PtpAffx.211343.1.S1_at	pmrna22235	hypothetical protein	-	1e-28	At3g01610	CDC48C	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-2	40	Ptp.3316.1.S1_at	BU816715	-	-	5e+0	At5g01520	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.65172.2.S1_s_at	CK091698	hypothetical protein	-	1e+0	At1g67400	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At2g21120	816647	unknown protein	F:unknown;P:biological_process unknown;C:unknown;MFPBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	GmaAffx.89772.42.S1_x_at	CK606038	-	-	5e+0	At5g56070	unknown protein	C.G.	S.X.	Please select
0.29	2e-82	305	Hordeum vulgare	MitoContig1_at	MitoContig1	-	-	3e+0	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	C.G.	S.X.	Please select
0.48	0	1061	Oryza sativa	Os08g0151000	AK106331.1	-	Myb, DNA-binding domain containing protein	5e-8	At1g19000	myb family transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.42	0	1076	Triticum aestivum	TaAffx.143998.1.S1_at	K01229.1	-	-	2e-1	At1g13760	unknown protein	C.G.	S.X.	Please select
0.49	0	946	Vitis vinifera	1620491_at	CD800015	hypothetical protein LOC100257942	-	2e+0	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	C.G.	S.X.	Please select
0.42	0	1076	Zea mays	ZmAffx.1219.1.S1_s_at	40794996-166	-	-	2e-1	At1g13760	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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