CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3383.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.3383.1.S1_at DN488137 hypothetical protein - 2e-25 At2g21270 ubiquitin fusion degradation UFD1 family protein S.X. H.G.
0.60 86.0 Ptp.100.2.S1_at CK088962 hypothetical protein - 1e+0 At3g56770 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.57 84.2 Ptp.100.1.S1_a_at BU834161 - - 4e-5 At2g41790 peptidase M16 family protein / insulinase family protein S.X. H.G.
0.55 82.2 Ptp.1253.1.S1_at CK109716 hypothetical protein - 5e-1 At5g09960 unknown protein S.X. H.G.
0.53 80.5 Ptp.1815.1.S1_at CV263204 hypothetical protein - 7e-139 At5g20000 26S proteasome AAA-ATPase subunit, putative S.X. H.G.
0.50 78.6 Ptp.3557.1.S1_at BU827074 - - 8e-6 At1g67680 7S RNA binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.1 98.7 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.9 97.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.67 0 1063 PtpAffx.204254.1.S1_at pmrna8373 hypothetical protein - 6e-72 At2g21270 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.67 0 1063 PtpAffx.204254.1.S1_s_at pmrna8373 hypothetical protein - 6e-72 At2g21270 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.67 0 819 PtpAffx.204573.1.S1_at pmrna8981 hypothetical protein - 4e-67 At2g21270 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.30 0 732 PtpAffx.20182.2.S1_at CV261841 - - 6e-3 At3g06660 PAPA-1-like family protein / zinc finger (HIT type) family protein C.G. S.X.
0.54 0 664 Ptp.4516.1.S1_s_at BI125281 hypothetical protein - 4e-60 At2g21270 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.66 1e-172 607 PtpAffx.20182.1.A1_s_at CV278921 hypothetical protein - 2e-15 At2g21270 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.21 2e-72 274 PtpAffx.36701.1.S1_s_at CF936040 hypothetical protein - 1e-34 At2g21270 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.01 2e-1 38 PtpAffx.222515.1.S1_at pmrna40004 hypothetical protein - 9e-56 At2g28390 SAND family protein C.G. S.X.
0.01 7e-1 36 PtpAffx.224152.1.S1_at pmrna42417 hypothetical protein - 1e-151 At5g42080 ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 2e-25 117 Arabidopsis thaliana At2g21270 816666 ubiquitin fusion degradation UFD1 family protein F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:unknown;OFMPAB - - - C.G. S.X.
0.23 1e-48 194 Glycine max GmaAffx.90621.1.S1_s_at CF806346 - - 4e-50 At2g21270 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.09 4e-9 61 Hordeum vulgare Contig8908_at Contig8908 - - 3e-12 At2g21270 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.14 8e-26 119 Oryza sativa Os02g0181800 AK121784.1 - Ubiquitin fusion degradation protein 1 homolog (UBfusion protein 1). Splice isoform Short 5e-8 At4g38930 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.07 2e-16 87 Triticum aestivum Ta.7484.1.A1_at AY587885.1 ubiquitin fusion degradation protein - 5e-27 At2g21270 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.15 2e-34 145 Vitis vinifera 1613706_at CA808981 hypothetical protein LOC100258971 - 2e-15 At4g38930 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
0.12 9e-7 54 Zea mays Zm.5286.1.A1_at CF632067 ubiquitin fusion degradation protein 1 - 2e-17 At2g21270 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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