CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3333.2.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.3333.2.A1_at CX658805 - - 2e-12 At1g63940 monodehydroascorbate reductase, putative S.X. H.G.
0.60 86.0 PtpAffx.192.1.S1_at DN487464 hypothetical protein - 2e+1 At5g60190 Ulp1 protease family protein S.X. H.G.
0.56 83.9 PtpAffx.212132.1.S1_s_at pmrna23792 hypothetical protein - 3e-1 At1g69170 squamosa promoter-binding protein-like 6 (SPL6) S.X. H.G.
0.50 78.6 Ptp.5713.2.S1_a_at AJ557585.1 high affinity nitrate transporter - 7e-6 At5g60770 ATNRT2.4 S.X. H.G.
0.40 67.0 PtpAffx.52100.1.A1_at CK097825 hypothetical protein - 1e-16 At5g25250 - S.X. H.G.
0.33 57.5 Ptp.1044.1.S1_at CF235854 hypothetical protein - 3e-33 At4g05390 ATRFNR1 (ROOT FNR 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.7 99.9 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
16.5 99.6 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.9 99.2 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.5 99.2 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.3 81.0 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.3 81.0 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.2 79.6 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.1 78.0 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.0 76.2 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.75 0 1057 PtpAffx.30421.1.A1_at CV276678 hypothetical protein - 9e-24 At1g63940 monodehydroascorbate reductase, putative C.G. S.X.
0.70 0 858 Ptp.3333.1.A1_s_at DN488114 hypothetical protein - 5e-6 At1g63940 monodehydroascorbate reductase, putative C.G. S.X.
0.01 1e-1 38 PtpAffx.203579.1.S1_at pmrna7109 hypothetical protein - 1e-15 At1g11290 CRR22 (CHLORORESPIRATORY REDUCTION22) C.G. S.X.
0.03 5e-1 36 PtpAffx.37864.1.A1_at CV235789 hypothetical protein - 1e-6 At1g65260 PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4) C.G. S.X.
0.01 5e-1 36 PtpAffx.14248.2.S1_at CV257447 hypothetical protein - 3e-19 At4g36440 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.213544.1.S1_at pmrna26472 hypothetical protein - 2e-19 At1g65260 PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4) C.G. S.X.
0.02 8e+0 32 PtpAffx.68128.1.S1_s_at BP922698 hypothetical protein - 9e-2 At1g14180 protein binding / zinc ion binding C.G. S.X.
0.02 8e+0 32 PtpAffx.549.2.S1_at CN523310 hypothetical protein - 1e-10 At5g51720 unknown protein C.G. S.X.
0.01 8e+0 32 PtpAffx.225671.1.S1_at pmrna45187 hypothetical protein - 2e-23 At4g34940 ARO1 (ARMADILLO REPEAT ONLY 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 2e-12 73 Arabidopsis thaliana At1g63940 842697 monodehydroascorbate reductase, putative F:ATP binding;P:response to cadmium ion, response to cold;C:mitochondrion, stromule, chloroplast stroma, chloroplast;BOMFAP - - - C.G. S.X.
0.24 9e-49 194 Glycine max Gma.9908.1.S1_at CD399899 - - 8e-59 At1g63940 monodehydroascorbate reductase, putative C.G. S.X.
0.09 2e-16 85 Hordeum vulgare Contig7230_at Contig7230 - - 8e-16 At1g63940 monodehydroascorbate reductase, putative C.G. S.X.
0.04 5e-2 40 Oryza sativa Os08g0151800 AK099848.1 - Pyridine nucleotide-disulphide oxidoreductase,class I family protein 8e-26 At1g63940 monodehydroascorbate reductase, putative C.G. S.X.
0.07 5e-13 75 Triticum aestivum Ta.6090.1.S1_x_at BT009531.1 - - 2e-20 At1g63940 monodehydroascorbate reductase, putative C.G. S.X.
0.20 9e-61 232 Vitis vinifera 1616438_at CF404470 hypothetical protein LOC100253570 - 1e-13 At1g63940 monodehydroascorbate reductase, putative C.G. S.X.
0.03 3e+0 32 Zea mays Zm.13304.1.S1_at CA827334 - - 8e-1 At1g22010 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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