CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3245.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 84.9 Ptp.3245.1.S1_s_at CV276464 hypothetical protein - 7e-14 At2g32290 BAM6 (BETA-AMYLASE 6) S.X. H.G.
0.82 96.3 PtpAffx.208791.1.S1_at pmrna17425 hypothetical protein - 4e-2 At2g37470 histone H2B, putative S.X. H.G.
0.80 96.0 PtpAffx.225183.1.S1_at pmrna44337 tir-nbs-lrr resistance protein - 6e-4 At4g19510 disease resistance protein (TIR-NBS-LRR class), putative S.X. H.G.
0.64 88.4 PtpAffx.214710.1.S1_s_at pmrna28534 tir-nbs-lrr resistance protein /// hypothetical protein - 3e-2 At3g03330 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.63 88.1 PtpAffx.75830.1.A1_at CN520644 hypothetical protein - 2e-2 At3g48630 unknown protein S.X. H.G.
0.59 84.9 PtpAffx.20320.1.A1_s_at CK090536 hypothetical protein - 4e-1 At1g67195 MIR414 (MICRORNA 414) S.X. H.G.
0.53 80.5 PtpAffx.143505.1.S1_at DN501335 hypothetical protein - 2e-8 At2g34585 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.14948.1.S1_at CN517401 hypothetical protein - 8e-9 At4g35790 ATPLDDELTA S.X. H.G.
0.46 73.7 PtpAffx.50325.1.A1_at CV249272 - - 2e+0 At5g06910 ATJ6 (Arabidopsis J-domain protein 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.9 99.9 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
21.2 99.8 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
10.0 98.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.8 97.4 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 42 PtpAffx.116461.1.S1_at CV242569 hypothetical protein - 7e-29 At4g00490 BAM2 (BETA-AMYLASE 2) C.G. S.X.
0.01 1e+0 36 PtpAffx.5585.2.A1_at CV260093 hypothetical protein - 5e-7 At4g27700 rhodanese-like domain-containing protein C.G. S.X.
0.01 1e+0 36 PtpAffx.208115.1.S1_at pmrna16120 hypothetical protein - 2e-1 At1g65810 tRNA-splicing endonuclease positive effector-related C.G. S.X.
0.01 1e+0 36 PtpAffx.204193.1.S1_at pmrna8255 hypothetical protein - 3e-19 At5g66600 unknown protein C.G. S.X.
0.01 1e+0 36 PtpAffx.203603.1.S1_at pmrna7146 - - 4e-24 At3g13400 sks13 (SKU5 Similar 13) C.G. S.X.
0.01 1e+0 36 PtpAffx.124666.1.S1_at BU823518 hypothetical protein - 8e-2 At5g22545 unknown protein C.G. S.X.
0.02 1e+0 36 Ptp.4840.1.S1_at BU811980 - - 1e-1 At1g59520 CW7 C.G. S.X.
0.01 5e+0 34 PtpAffx.9938.1.A1_at BP933448 - - 2e+0 At5g42330 unknown protein C.G. S.X.
0.01 5e+0 34 PtpAffx.24508.2.A1_at CV241461 hypothetical protein - 5e-5 At2g43950 OEP37 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 7e-14 79 Arabidopsis thaliana At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO - - - C.G. S.X.
0.35 3e-35 151 Glycine max Gma.595.1.S1_at AB004271.1 beta-amylase - 2e-11 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
0.08 7e-3 42 Hordeum vulgare Contig1411_s_at Contig1411 - - 6e-5 At4g15210 BAM5 (BETA-AMYLASE 5) C.G. S.X.
0.12 1e-16 89 Oryza sativa Os07g0543300 BM418911 - Glycoside hydrolase, family 14B, plant protein 2e+1 At5g43401 - C.G. S.X.
0.04 1e-3 46 Triticum aestivum Ta.3.1.S1_at BJ265463 beta-amylase - 3e-7 At4g15210 BAM5 (BETA-AMYLASE 5) C.G. S.X.
0.03 4e-3 42 Vitis vinifera 1621861_at CF209183 - - 5e-15 At5g55700 BAM4 (BETA-AMYLASE 4) C.G. S.X.
0.12 4e-10 65 Zea mays Zm.80.1.A1_at CD972407 beta-amylase - 6e-2 At2g32290 BAM6 (BETA-AMYLASE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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