Gene omics information

Query gene ID	Ptp.3185.1.S1_at
Gene name	phenylalanine amonnia lyase
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	Ptp.3185.1.S1_at	AF480620.1	phenylalanine amonnia lyase	-	2e-33	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.140060.1.A1_at	CV274189	-	-	1e+1	Atmg00870	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.218090.1.S1_at	pmrna33613	hypothetical protein	-	7e-1	At3g55920	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.221797.1.S1_s_at	pmrna38853	hypothetical protein	-	8e-1	At1g24210	paired amphipathic helix repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.214981.1.S1_at	pmrna28917	hypothetical protein	-	3e+1	At5g42635	glycine-rich protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.202211.1.S1_at	pmrna4430	hypothetical protein	-	1e-1	At2g34990	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.11036.1.A1_at	CV283821	-	-	1e+0	At5g16800	GCN5-related N-acetyltransferase (GNAT) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.3	98.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
7.2	98.1	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.0	97.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.8	96.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	4657	Ptp.3185.1.S1_x_at	AF480620.1	phenylalanine amonnia lyase	-	2e-33	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.79	0	2462	PtpAffx.2272.1.S1_a_at	AY372451.1	phenylalanine amonnia lyase	-	1e-49	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	0	1090	PtpAffx.128701.1.S1_s_at	CX185749	phenylalanine amonnia lyase	-	4e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	0	1090	PtpAffx.128701.1.S1_at	CX185749	phenylalanine amonnia lyase	-	4e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.31	0	638	PtpAffx.2272.4.S1_a_at	CV263762	phenylalanine amonnia lyase	-	3e-2	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	3e-85	317	Ptp.2482.1.S1_at	CF229547	phenylalanine amonnia lyase	-	2e-2	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.46	4e-69	264	PtpAffx.1672.2.A1_x_at	AF480619.1	-	-	8e-24	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.28	2e-24	115	Ptp.4730.1.A1_s_at	CV267232	-	-	1e-10	At3g53260	PAL2	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	1e-13	79	PtpAffx.1672.3.A1_a_at	CV271667	phenylalanine amonnia lyase	-	1e-3	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	2e-33	145	Arabidopsis thaliana	At3g10340	820196	PAL4 (Phenylalanine ammonia-lyase 4)	F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	3e-67	258	Glycine max	GmaAffx.59470.1.S1_at	BI469872	-	-	5e-18	At3g53260	PAL2	C.G.	S.X.	Please select
0.16	9e-37	155	Hordeum vulgare	Contig1795_at	Contig1795	-	-	3e-16	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.12	5e-17	91	Oryza sativa	Os02g0626400	BI807677	-	Phenylalanine ammonia-lyase (EC 4.3.1.5)	1e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	4e-16	87	Triticum aestivum	Ta.7022.1.S1_x_at	BJ281221	-	-	7e-11	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.43	5e-96	351	Vitis vinifera	1619642_at	CF512453	hypothetical protein LOC100241575	-	3e-28	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select
0.05	4e-8	59	Zea mays	Zm.15903.2.A1_at	BM266872	-	-	2e-11	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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