CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3133.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.78 95.1 Ptp.3133.1.S1_s_at DN490108 hypothetical protein - 1e-24 At4g34980 SLP2 S.X. H.G.
0.70 91.7 Ptp.1108.2.A1_at CK090142 - - 9e-8 At1g25440 zinc finger (B-box type) family protein S.X. H.G.
0.65 88.6 PtpAffx.67441.1.S1_at DN498585 hypothetical protein - 3e-4 At1g73110 ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative S.X. H.G.
0.61 87.0 PtpAffx.71066.10.S1_at DN484638 - - 8e-3 At1g05010 EFE (ETHYLENE-FORMING ENZYME) S.X. H.G.
0.61 87.0 Ptp.2947.1.S1_at DN489526 hypothetical protein - 1e-1 At4g24973 - S.X. H.G.
0.58 84.2 Ptp.7529.1.S1_at DN495630 hypothetical protein - 1e-45 At3g28460 unknown protein S.X. H.G.
0.58 84.2 Ptp.889.1.S1_at BI072818 - - 3e+0 At5g58060 YKT61 S.X. H.G.
0.56 83.9 PtpAffx.86646.1.S1_at BU891442 - - 2e+0 At5g51210 OLEO3 (OLEOSIN3) S.X. H.G.
0.55 82.2 PtpAffx.132098.1.A1_at DN490875 hypothetical protein - 2e-5 At1g17220 FUG1 (fu-gaeri1) S.X. H.G.
0.51 78.9 Ptp.6138.1.S1_at CK094815 - - 4e-1 At1g53090 SPA4 (SPA1-RELATED 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.4 99.5 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
11.1 99.1 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
10.4 99.0 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.5 98.6 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
8.2 98.5 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.7 98.3 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.9 97.4 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.9 97.4 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.56 0 928 Ptp.5791.1.S1_at CN549300 hypothetical protein - 3e-9 At4g34980 SLP2 C.G. S.X.
0.34 0 797 PtpAffx.1746.1.S1_at CN520108 hypothetical protein - 5e-8 At3g14240 subtilase family protein C.G. S.X.
0.01 1e-3 46 PtpAffx.200469.1.S1_s_at pmrna947 hypothetical protein - 4e-6 At4g21326 ATSBT3.12 (SUBTILASE 3.12) C.G. S.X.
0.03 1e-3 46 Ptp.1490.1.S1_s_at BU812665 - - 8e-4 At5g51750 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) C.G. S.X.
0.03 1e-3 46 Ptp.1490.1.S1_at BU812665 - - 8e-4 At5g51750 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) C.G. S.X.
0.02 5e-3 44 Ptp.161.1.S1_at CF233975 hypothetical protein - 4e-3 At5g51750 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) C.G. S.X.
0.03 2e-2 42 PtpAffx.39597.1.S1_s_at CF234937 hypothetical protein - 2e-3 At5g51750 ATSBT1.3 (ARABIDOPSIS THALIANA SUBTILASE 1.3) C.G. S.X.
0.03 2e-2 42 PtpAffx.204478.1.S1_at pmrna8790 - - 7e-2 At4g21650 subtilase family protein C.G. S.X.
0.01 8e-2 40 PtpAffx.37640.1.A1_at CV243819 - - 2e-22 At3g51310 VPS35C (VPS35 HOMOLOG C) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-24 115 Arabidopsis thaliana At4g34980 829650 SLP2 Serine protease similar to subtilisin. - - - C.G. S.X.
0.09 5e-3 44 Glycine max GmaAffx.72274.1.S1_at AW349905 - - 1e-4 At4g34980 SLP2 C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig12291_at Contig12291 - - 5e-2 At1g18860 WRKY61 C.G. S.X.
0.01 2e+0 36 Oryza sativa Os04g0127300 AK062269.1 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 3e-1 At4g10520 subtilase family protein C.G. S.X.
0.02 4e+0 34 Triticum aestivum TaAffx.84870.1.S1_at AJ613575 - - 2e-2 At1g11240 unknown protein C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1615265_at CF514099 hypothetical protein LOC100262252 - 2e-5 At4g14160 transport protein, putative C.G. S.X.
0.01 2e+0 34 Zea mays Zm.19305.1.A1_at CO524946 hypothetical protein LOC100191620 - 1e+0 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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