Gene omics information

Query gene ID	Ptp.3086.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	Ptp.3086.1.S1_s_at	BU832807	hypothetical protein	-	4e-47	At2g13560	malate oxidoreductase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.149909.1.S1_s_at	AJ773011	hypothetical protein	-	3e-141	At2g13560	malate oxidoreductase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.150645.1.S1_at	AJ778728	hypothetical protein	-	2e-15	At1g75420	glycosyl transferase family 1 protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.84497.1.S1_s_at	CF231611	hypothetical protein	-	9e-17	At3g18140	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.83555.1.S1_s_at	BI068935	hypothetical protein	-	3e-4	At1g14850	NUP155	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.2360.3.S1_a_at	CX179099	hypothetical protein	-	2e-18	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	94.0	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	0	1106	PtpAffx.100.1.S1_at	DN495983	hypothetical protein	-	1e-76	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	Ptp.5707.1.A1_s_at	CV240377	thioredoxin o	-	1e-7	At1g31020	ATO2 (Arabidopsis thioredoxin o2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.62633.3.A1_a_at	CK112007	hypothetical protein	-	5e-3	At1g12450	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.1108.3.A1_a_at	DN486619	f-box family protein	-	1e+0	At5g60200	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.94786.1.A1_at	CV271627	-	-	5e-26	At3g54610	GCN5	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.59736.1.S1_at	BU882390	f-box family protein	-	2e+0	At1g67480	kelch repeat-containing F-box family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.5230.1.A1_at	CV256412	hypothetical protein	-	7e-3	At1g09812	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	8e+0	32	PtpAffx.22516.2.S1_a_at	BU861381	hypothetical protein	-	5e-2	At1g78890	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.22516.1.A1_at	AY442256.1	hypothetical protein	-	2e-12	At1g80940	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	4e-47	188	Arabidopsis thaliana	At2g13560	815842	malate oxidoreductase, putative	F:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	2e-74	280	Glycine max	GmaAffx.11325.1.S1_at	AW351168	-	-	2e-53	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.24	3e-15	81	Hordeum vulgare	Contig5489_at	Contig5489	-	-	7e-64	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.25	4e-21	103	Oryza sativa	Os07g0496200	AK061706.1	-	NAD-dependent malic enzyme 62 kDa isoform,mitochondrial precursor (EC 1.1.1.39) (NAD-ME)	3e-48	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	3e-14	79	Triticum aestivum	Ta.7720.1.S1_a_at	AJ612921	-	-	1e-56	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1614876_at	CF213268	hypothetical protein LOC100244642	-	1e+0	At1g73510	unknown protein	C.G.	S.X.	Please select
0.15	7e-16	83	Zea mays	Zm.3666.1.A1_at	BG873898	hypothetical protein LOC100191942	-	1e-2	At2g13560	malate oxidoreductase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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