CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.3059.1.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 Ptp.3059.1.A1_s_at CV227410 hypothetical protein - 5e-13 At5g33320 CUE1 (CAB UNDEREXPRESSED 1) S.X. H.G.
0.60 86.0 PtpAffx.69692.1.S1_at CV246679 hypothetical protein - 5e-26 At5g32450 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.57 84.2 Ptp.2370.1.A1_at CV228969 hypothetical protein - 2e-77 At5g49460 ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2) S.X. H.G.
0.46 73.7 PtpAffx.160058.1.A1_at CV230119 hypothetical protein - 7e-3 At4g00905 - S.X. H.G.
0.43 69.7 PtpAffx.249.99.A1_s_at CV248963 s-adenosylmethionine synthetase 4 - 2e-174 At1g02500 SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) S.X. H.G.
0.25 43.6 Ptp.5538.1.S1_s_at AI162588 hypothetical protein - 1e-31 At5g50370 adenylate kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.8 98.9 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
9.0 98.7 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.3 98.5 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM372098 Clone3200_LPI5_N-_8w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.76 0 704 Ptp.3059.2.A1_at CV251136 hypothetical protein - 1e-22 At5g33320 CUE1 (CAB UNDEREXPRESSED 1) C.G. S.X.
0.66 6e-115 414 PtpAffx.42166.1.A1_at CV279089 - - 3e-14 At5g33320 CUE1 (CAB UNDEREXPRESSED 1) C.G. S.X.
0.11 1e-5 52 PtpAffx.200957.1.S1_at pmrna1877 hypothetical protein - 6e-10 At3g01550 PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2) C.G. S.X.
0.02 2e+0 34 PtpAffx.29298.1.A1_at CK111166 hypothetical protein - 4e-1 At5g13970 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.161226.1.S1_at CN192929 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase - 3e-23 At4g33510 DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) C.G. S.X.
0.02 2e+0 34 Ptp.7526.1.S1_at DN494600 hypothetical protein - 2e-3 At5g03790 HB51 C.G. S.X.
0.02 9e+0 32 PtpAffx.86862.1.S1_at CK111055 - - 1e+0 At5g16550 unknown protein C.G. S.X.
0.02 9e+0 32 PtpAffx.33044.1.S1_at CV279359 hypothetical protein - 1e-1 At4g03160 - C.G. S.X.
0.02 9e+0 32 PtpAffx.24142.1.A1_at CV262024 hypothetical protein - 2e-8 At3g59050 ATPAO3 (Polyamine oxidase 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 5e-13 75 Arabidopsis thaliana At5g33320 833308 CUE1 (CAB UNDEREXPRESSED 1) Encodes a plastid inner envelope protein PPT (phosphoenolpyruvate/phosphate translocator) that catalyzes the transport of phosphoenolpyruvate and phosphate across the inner envelope membrane of plastids. - - - C.G. S.X.
0.40 1e-41 171 Glycine max Gma.12432.1.S1_a_at BU765584 Putative plastid phosphoenolpyruvate/phosphate translocator mRNA, partial cds; nuclear gene for plastid product - 3e-30 At5g33320 CUE1 (CAB UNDEREXPRESSED 1) C.G. S.X.
0.19 5e-8 57 Hordeum vulgare Contig5378_at Contig5378 - - 4e-9 At5g33320 CUE1 (CAB UNDEREXPRESSED 1) C.G. S.X.
0.17 9e-13 75 Oryza sativa Os09g0297400 AF372833.1 - Phosphate/phosphoenolpyruvate translocator 2e-11 At5g33320 CUE1 (CAB UNDEREXPRESSED 1) C.G. S.X.
0.25 1e-7 57 Triticum aestivum Ta.26650.1.A1_at CD491473 - - 4e-13 At5g33320 CUE1 (CAB UNDEREXPRESSED 1) C.G. S.X.
0.26 3e-33 141 Vitis vinifera 1608643_at CF373332 similar to phosphate/phosphoenolpyruvate translocator - 1e+0 At3g01550 PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2) C.G. S.X.
0.11 2e-7 56 Zea mays Zm.5274.1.S1_at CD990782 triose phosphate/phosphate translocator, non-green plastid,chloroplast - 4e-18 At5g33320 CUE1 (CAB UNDEREXPRESSED 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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