Gene omics information

Query gene ID Ptp.3043.1.S1_s_at
Gene name 4-Coumarate:CoA ligase
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8397.0Ptp.3043.1.S1_s_atAF041049.14-Coumarate:CoA ligase-3e-13At1g516804CL1 (4-COUMARATE:COA LIGASE 1)S.X.H.G.
0.6791.1PtpAffx.12443.4.A1_s_atCV240107cytochrome P450 cinnamate 4-hydroxylase-7e-24At2g30490C4H (CINNAMATE-4-HYDROXYLASE)S.X.H.G.
0.4673.7PtpAffx.108986.1.S1_atAJ777271hypothetical protein-3e-38At5g54800GPT1S.X.H.G.
0.3559.7PtpAffx.283.14.A1_x_atCV272972hypothetical protein-2e-34At5g20830SUS1 (SUCROSE SYNTHASE 1)S.X.H.G.
0.3357.5Ptp.791.1.S1_s_atCK087231cinnamyl alcohol dehydrogenase-6e-26At3g19450ATCAD4S.X.H.G.
0.3357.5PtpAffx.1193.1.S1_atCV227263coniferylaldehyde 5- hydroxylase-6e-5At4g36220FAH1 (FERULIC ACID 5-HYDROXYLASE 1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
19.499.7GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
14.699.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
4.996.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.996.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
4.495.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue series
3.494.0GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
2.992.5GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
2.992.5GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.992.5GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0003497Ptp.3043.1.S1_atAF041049.14-Coumarate:CoA ligase-3e-13At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.312e-126454Ptp.1341.2.A1_atCK088238--8e-4At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.201e-31139PtpAffx.87600.2.S1_atAF008183.14-Coumarate:CoA ligase-3e-4At1g650604CL3C.G.S.X.
0.283e-26121PtpAffx.87600.1.S1_atAF008184.1--2e-8At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.087e-24113PtpAffx.94917.1.A1_atCV2668474-Coumarate:CoA ligase-3e+0At4g12850far-red impaired responsive family protein / FAR1 family proteinC.G.S.X.
0.024e-448Ptp.7231.1.A1_atCV2757034-coumarate-coa ligase-1e-11At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.013e-138PtpAffx.91108.1.S1_atCA825894hypothetical protein-8e-11At2g45690SSE1 (SHRUNKEN SEED 1)C.G.S.X.
0.013e-138PtpAffx.62573.1.A1_atCV274407--3e-1At3g22680unknown proteinC.G.S.X.
0.013e-138PtpAffx.209472.1.S1_atpmrna18782hypothetical protein-5e-1At1g72030GCN5-related N-acetyltransferase (GNAT) family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.213e-1377Arabidopsis thalianaAt1g516808415934CL1 (4-COUMARATE:COA LIGASE 1)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.---C.G.S.X.
0.181e-25119Glycine maxGma.1190.1.S1_atAF279267.14-coumarate:coenzyme A ligase-1e-3At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.042e-963Hordeum vulgareContig4676_atContig4676--6e-2At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.063e-861Oryza sativaOs02g0177600AK070083.1-4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1)3e-7At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.052e-861Triticum aestivumTa.5623.1.S1_x_atCK197632--2e+0At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.091e-28127Vitis vinifera1609307_atCD715818hypothetical protein LOC100254698-3e-16At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.082e-654Zea maysZm.1390.1.A1_atAY106966.1--3e-3At3g212304CL5 (4-coumarate:CoA ligase 5)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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