Gene omics information

Query gene ID	Ptp.2927.2.S1_at
Gene name	tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	Ptp.2927.2.S1_at	DN499742	tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein	-	5e-47	At5g06680	SPC98 (SPINDLE POLE BODY COMPONENT 98)	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	Ptp.5438.1.S1_at	CK106216	hypothetical protein	-	1e-14	At1g80600	WIN1 (HOPW1-1-INTERACTING 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.3945.1.S1_at	CF235619	hypothetical protein	-	1e-4	At2g16760	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.220765.1.S1_s_at	pmrna37189	hypothetical protein /// cyclic nucleotide-gated channel	-	4e-12	At4g30360	ATCNGC17	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.6370.3.S1_a_at	CK091400	hypothetical protein	-	6e+0	At3g23635	RTFL13 (ROTUNDIFOLIA LIKE 13)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.122535.1.S1_at	CX183941	-	-	7e-5	At1g52760	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.136498.1.S1_at	CF230021	hypothetical protein	-	6e-3	At1g52260	ATPDIL1-5 (PDI-LIKE 1-5)	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	Ptp.777.1.A1_at	CV236864	-	-	7e+0	At4g05530	IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.200755.1.S1_s_at	pmrna1462	hypothetical protein	-	2e-46	At1g07380	ceramidase family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.6	98.3	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.9	98.0	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.1	97.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.0	97.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.6	97.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.4	97.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	4e-42	173	Ptp.2927.1.A1_at	DN489822	tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein	-	1e-4	At5g06680	SPC98 (SPINDLE POLE BODY COMPONENT 98)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	9e-3	42	PtpAffx.134093.1.A1_at	CV249298	tubulin gamma complex-associated protein	-	7e-9	At5g06680	SPC98 (SPINDLE POLE BODY COMPONENT 98)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	36	PtpAffx.41242.1.S1_at	CK091555	hypothetical protein	-	2e-5	At3g10530	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.224179.1.S1_at	pmrna42474	hypothetical protein	-	1e-1	At4g35370	nucleotide binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.211400.1.S1_at	pmrna22344	hypothetical protein	-	9e-34	At4g37670	GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-1	36	Ptp.3344.1.S1_at	BU815579	-	-	1e+1	At5g59990	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.63390.1.A1_at	CV242719	-	-	6e+0	At5g63000	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.4403.5.A1_a_at	CK096240	hypothetical protein	-	7e+0	At3g20420	RTL2 (RNASE THREE-LIKE PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.4403.4.A1_a_at	CV280499	hypothetical protein	-	2e+0	At3g04943	LCR41 (Low-molecular-weight cysteine-rich 41)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	5e-47	188	Arabidopsis thaliana	At5g06680	830557	SPC98 (SPINDLE POLE BODY COMPONENT 98)	Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	9e+0	32	Glycine max	HgAffx.7867.1.S1_at	CB824344	-	-	6e+0	At1g14650	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig14972_at	Contig14972	-	-	4e+0	At1g58725	GDSL-motif lipase, putative	C.G.	S.X.	Please select
0.13	8e-4	46	Oryza sativa	Os09g0446200	CB619345	-	Spc97/Spc98 family protein	9e-6	At5g06680	SPC98 (SPINDLE POLE BODY COMPONENT 98)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Triticum aestivum	TaAffx.80270.2.S1_at	CA699178	-	-	1e+1	At5g60850	OBP4	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1622135_at	BQ793522	-	-	4e+0	At4g27840	-	C.G.	S.X.	Please select
0.03	1e+1	30	Zea mays	ZmAffx.943.1.S1_at	AI820396	-	-	2e+0	At5g62290	nucleotide-sensitive chloride conductance regulator (ICln) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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