Gene omics information

Query gene ID	Ptp.2849.2.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	73.7	Ptp.2849.2.A1_at	DN484673	-	-	6e+0	At3g61450	SYP73 (SYNTAXIN OF PLANTS 73)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.217816.1.S1_at	pmrna33230	hypothetical protein	-	3e-3	At5g50700	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.206887.1.S1_at	pmrna13672	hypothetical protein	-	4e+0	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.221080.1.S1_at	pmrna37660	hypothetical protein	-	2e+0	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.153695.1.A1_at	CV246282	-	-	2e+0	At2g32020	GCN5-related N-acetyltransferase (GNAT) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.224499.1.S1_at	pmrna43089	hypothetical protein	-	5e-12	At5g59810	SBT5.4	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.203463.1.S1_at	pmrna6897	autoinhibited H+ ATPase	-	1e-44	At3g42640	AHA8 (Arabidopsis H(+)-ATPase 8)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.1	99.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
14.1	99.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
7.3	98.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.2	97.6	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.2	96.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.3	95.8	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	PtpAffx.88778.1.A1_at	CV253105	hypothetical protein	-	4e-59	At2g32730	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	32	PtpAffx.63251.1.A1_at	CV266520	hypothetical protein	-	3e+0	At1g52340	ABA2 (ABA DEFICIENT 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	32	PtpAffx.213833.1.S1_at	pmrna26994	hypothetical protein	-	0	At2g32730	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e+0	30	PtpAffx.90682.1.A1_at	CK096980	hypothetical protein	-	6e-6	At2g38130	ATMAK3	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e+0	30	PtpAffx.26247.1.S1_at	CK106265	hypothetical protein	-	5e+0	At5g63065	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	30	PtpAffx.224567.1.S1_s_at	pmrna43218	hypothetical protein	-	5e-42	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	30	PtpAffx.224567.1.S1_at	pmrna43218	hypothetical protein	-	5e-42	At1g50310	STP9 (SUGAR TRANSPORTER 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	8e+0	30	PtpAffx.211728.1.S1_at	pmrna22982	hypothetical protein	-	1e+0	At4g02090	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	30	PtpAffx.208004.1.S1_at	pmrna15886	-	-	1e-14	At1g25510	aspartyl protease family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	30	Arabidopsis thaliana	At3g61450	825318	SYP73 (SYNTAXIN OF PLANTS 73)	syntaxin of plants 73 (SYP73)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	8e+0	30	Glycine max	HgAffx.6715.1.S1_at	CB825496	-	-	1e+0	At5g08590	SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)	C.G.	S.X.	Please select
0.06	3e+0	30	Hordeum vulgare	HA24G18r_at	HA24G18r	-	-	3e+0	At4g25560	AtMYB18 (myb domain protein 18)	C.G.	S.X.	Please select
0.02	1e+1	30	Oryza sativa	Os07g0602800	9635.m04116	-	Glycerophosphoryl diester phosphodiesterase familyprotein	4e-2	At1g74210	glycerophosphoryl diester phosphodiesterase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e+0	30	Triticum aestivum	TaAffx.78088.1.S1_at	CA737721	-	-	2e-1	At1g11820	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select
0.05	1e-1	34	Vitis vinifera	1616774_at	CF568877	-	-	4e+0	At5g42957	unknown protein	C.G.	S.X.	Please select
0.05	1e+1	28	Zea mays	Zm.16593.9.S1_x_at	AI657431	Hypothetical protein LOC100192949	-	1e-2	At5g15520	40S ribosomal protein S19 (RPS19B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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