Gene omics information

Query gene ID	Ptp.273.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	97.9	Ptp.273.1.S1_x_at	CK087938	hypothetical protein	-	2e-24	At3g42050	vacuolar ATP synthase subunit H family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.5572.1.S1_at	CN549739	hypothetical protein	-	8e-24	At3g04780	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.1497.2.S1_x_at	CV243508	s-adenosylmethionine synthetase 5	-	3e-179	At1g02500	SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.10270.2.A1_a_at	CV244557	hypothetical protein	-	2e-52	At3g58500	PP2A-3 (PROTEIN PHOSPHATASE 2A-3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.2333.2.A1_at	CV243832	hypothetical protein	-	5e-6	At3g16480	MPPalpha (mitochondrial processing peptidase alpha subunit)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.5095.2.S1_a_at	CF235242	hypothetical protein	-	2e-83	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	Ptp.3336.1.S1_s_at	CV274607	hypothetical protein	-	2e-2	At3g47836	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.28	50.5	Ptp.6268.1.A1_s_at	DN490825	hypothetical protein	-	2e-13	At4g36195	serine carboxypeptidase S28 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.6303.1.S1_at	CV274575	hypothetical protein	-	1e-1	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.2620.1.S1_at	CV257022	hypothetical protein	-	2e-81	At1g30890	integral membrane HRF1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.9	92.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1729	Ptp.273.1.S1_at	CK087938	hypothetical protein	-	2e-24	At3g42050	vacuolar ATP synthase subunit H family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.58	0	789	PtpAffx.212182.1.S1_at	pmrna23881	hypothetical protein	-	7e-35	At3g42050	vacuolar ATP synthase subunit H family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.31	2e-143	510	Ptp.5482.1.S1_at	CX655031	hypothetical protein	-	2e-46	At3g42050	vacuolar ATP synthase subunit H family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.8326.1.A1_at	CV234712	hypothetical protein	-	4e-6	At3g17860	JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.75463.1.A1_at	CV269166	hypothetical protein	-	1e-7	At2g29670	binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.216536.1.S1_at	pmrna31375	hypothetical protein	-	3e-22	At3g14440	NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.206170.1.S1_at	pmrna12249	hypothetical protein	-	1e-10	At1g16670	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.202078.1.S1_at	pmrna4144	hypothetical protein	-	3e+0	At5g53680	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.160840.1.S1_s_at	AJ777167	hypothetical protein	-	2e-5	At1g30100	NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	2e-24	113	Arabidopsis thaliana	At3g42050	823170	vacuolar ATP synthase subunit H family protein	F:binding, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuolar membrane, chloroplast, plasma membrane, vacuole, plant-type vacuole;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	2e-75	284	Glycine max	Gma.5705.1.S1_at	CD405659	-	-	1e-43	At3g42050	vacuolar ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.09	2e-17	89	Hordeum vulgare	Contig3655_at	Contig3655	-	-	3e-16	At3g42050	vacuolar ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.11	3e-28	127	Oryza sativa	Os07g0549700	AK104331.1	-	ARM repeat fold domain containing protein	1e-12	At3g42050	vacuolar ATP synthase subunit H family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	9e-18	91	Triticum aestivum	Ta.4798.1.S1_at	CK163023	Vacuolar proton ATPase subunit H	-	2e-8	At3g42050	vacuolar ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.51	4e-125	446	Vitis vinifera	1609434_at	CF211782	hypothetical protein LOC100240790	-	1e-41	At3g42050	vacuolar ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.17	2e-32	139	Zea mays	Zm.3986.1.A1_at	AY108648.1	vacuolar ATPase subunit H protein	-	4e-9	At3g42050	vacuolar ATP synthase subunit H family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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