Gene omics information

Query gene ID	Ptp.2652.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	82.2	Ptp.2652.1.A1_at	CV251557	hypothetical protein	-	2e-9	At2g46540	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.75	94.1	PtpAffx.223521.1.S1_x_at	pmrna41561	hypothetical protein	-	1e+1	At5g66700	HB53	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.224082.1.S1_x_at	pmrna42319	hypothetical protein	-	1e-2	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.88903.1.A1_at	CV247217	hypothetical protein	-	9e-1	At2g01770	VIT1 (vacuolar iron transporter 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.217474.1.S1_at	pmrna32753	hypothetical protein	-	7e+0	At3g18295	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.3190.3.A1_at	CV229036	-	-	7e-1	At1g50930	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.222801.1.S1_at	pmrna40461	hypothetical protein	-	5e-1	At3g22360	AOX1B	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.1	100.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.3	81.0	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.3	81.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.2	79.6	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	876	Ptp.2652.1.A1_s_at	CV251557	hypothetical protein	-	2e-9	At2g46540	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.51	0	767	PtpAffx.1044.1.A1_at	CV252915	hypothetical protein	-	2e-11	At2g46540	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.64	0	763	PtpAffx.1044.2.A1_at	CV246989	hypothetical protein	-	2e-11	At2g46540	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	6e-32	139	PtpAffx.9869.1.S1_at	DN496019	hypothetical protein	-	4e+0	At5g57120	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	6e-32	139	PtpAffx.9869.1.S1_a_at	DN496019	hypothetical protein	-	4e+0	At5g57120	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	8e-16	85	PtpAffx.9869.2.S1_at	CV277567	hypothetical protein	-	4e+0	At3g19650	cyclin-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-1	36	PtpAffx.59887.1.S1_at	DN501609	hypothetical protein	-	9e-2	At5g29000	myb family transcription factor	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.43627.2.A1_at	CV265341	-	-	3e-2	At3g23230	ethylene-responsive factor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.213134.1.S1_at	pmrna25699	autoinhibited calcium ATPase	-	2e+0	At2g29330	TRI (tropinone reductase)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	2e-9	63	Arabidopsis thaliana	At2g46540	819266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-4	48	Glycine max	Gma.6011.1.S1_at	CA800937	-	-	3e-1	At1g63460	glutathione peroxidase, putative	C.G.	S.X.	Please select
0.03	4e+0	32	Hordeum vulgare	HV11E19u_at	HV11E19u	-	-	4e+0	At3g44960	unknown protein	C.G.	S.X.	Please select
0.07	1e-3	46	Oryza sativa	Os01g0705500	AK063120.1	-	-	1e+0	At5g11120	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	Ta.12550.1.A1_at	BQ241823	-	-	8e-1	At3g62180	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1614832_at	CA808973	hypothetical protein LOC100258010	-	3e-1	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.9195.1.A1_at	CF623343	hypothetical protein LOC100272859	-	1e-7	At3g14910	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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