Gene omics information

Query gene ID Ptp.2625.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8397.0Ptp.2625.1.S1_atCK093627hypothetical protein-7e+0At1g19180JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)S.X.H.G.
0.6791.1Ptp.7152.1.A1_atDN488191hypothetical protein-4e-2At1g62530unknown proteinS.X.H.G.
0.4369.7PtpAffx.8674.4.S1_atCV233756hypothetical protein-5e-7At2g33510protein bindingS.X.H.G.
0.4067.0Ptp.8005.1.S1_atDN503222hypothetical protein-4e-1At5g35180phosphoinositide bindingS.X.H.G.
0.3661.6Ptp.1051.2.A1_a_atCK090246--2e-1At5g60590yrdC protein-relatedS.X.H.G.
0.1118.1Ptp.4170.1.S1_atDN499129global transcription factor group-4e+0At4g13220unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.098.4GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
6.397.7GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
5.597.1GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
4.996.5GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
3.494.0GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.490.4GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.289.3GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
2.188.6GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue series
2.088.0GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.098e-28125PtpAffx.139754.1.S1_atAJ768857hypothetical protein-3e-2At3g47850unknown proteinC.G.S.X.
0.036e-136PtpAffx.204858.1.S1_atpmrna9603hypothetical protein-4e+0At5g50090unknown proteinC.G.S.X.
0.026e-136Ptp.4028.1.S1_atDN488604hypothetical protein-3e-45At5g09680cytochrome b5 domain-containing proteinC.G.S.X.
0.022e+034PtpAffx.205284.1.S1_atpmrna10474hypothetical protein-1e-1At5g45970ARAC2 (ARABIDOPSIS RAC-LIKE 2)C.G.S.X.
0.012e+034PtpAffx.201673.1.S1_atpmrna3331hypothetical protein-8e-58At2g31320PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2)C.G.S.X.
0.029e+032PtpAffx.89950.1.S1_atCK318312hypothetical protein-6e-63At1g70310SPDS2 (spermidine synthase 2)C.G.S.X.
0.019e+032PtpAffx.86393.1.S1_s_atCV264156hypothetical protein-2e-81At3g23300dehydration-responsive protein-relatedC.G.S.X.
0.019e+032PtpAffx.24003.1.A1_atCV245118hypothetical protein-8e-10At4g38160pde191 (pigment defective 191)C.G.S.X.
0.039e+032PtpAffx.225683.1.S1_atpmrna45211hypothetical protein-1e+0At3g50920phosphatidic acid phosphatase-related / PAP2-relatedC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.027e+032Arabidopsis thalianaAt1g19180838501JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.---C.G.S.X.
0.131e-552Glycine maxGmaAffx.75615.1.A1_atAW310899--3e-6At3g47850unknown proteinC.G.S.X.
0.033e+032Hordeum vulgareContig15201_atContig15201--8e+0At5g40382cytochrome-c oxidaseC.G.S.X.
0.028e-136Oryza sativaOs04g0650700AK058733.1-L-asparaginase (L-asparagine amidohydrolase)1e-1At3g16150L-asparaginase, putative / L-asparagine amidohydrolase, putativeC.G.S.X.
0.032e+034Triticum aestivumTa.22012.1.S1_atCA715481--2e+0At1g68185ubiquitin-relatedC.G.S.X.
0.052e-1375Vitis vinifera1615432_atCF518729hypothetical protein LOC100258784-3e-9At3g47850unknown proteinC.G.S.X.
0.023e+032Zea maysZm.4757.1.A1_atCF972564--1e+0At4g31580SRZ-22C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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