CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.2621.1.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 Ptp.2621.1.A1_s_at CV267140 hypothetical protein - 1e-1 At1g67910 unknown protein S.X. H.G.
0.67 91.1 PtpAffx.223523.1.S1_s_at pmrna41567 hypothetical protein - 6e-1 At3g28850 glutaredoxin family protein S.X. H.G.
0.43 69.7 PtpAffx.25312.1.A1_at CV275203 hypothetical protein - 2e+0 At5g43750 unknown protein S.X. H.G.
0.33 57.5 PtpAffx.50509.1.A1_at CV242668 hypothetical protein - 5e-19 At3g06670 binding S.X. H.G.
0.31 53.7 PtpAffx.121399.2.A1_a_at DN492201 - - 1e+0 At2g07772 unknown protein S.X. H.G.
0.26 45.2 PtpAffx.209777.1.S1_at pmrna19286 hypothetical protein - 2e-20 At1g17210 zinc ion binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.5 99.7 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
15.5 99.5 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
9.6 98.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.4 98.8 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
8.6 98.6 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.67 0 1065 PtpAffx.208287.1.S1_at pmrna16483 hypothetical protein - 2e-1 At1g67910 unknown protein C.G. S.X.
0.69 0 648 PtpAffx.37991.1.S1_at CV229523 hypothetical protein - 1e+0 At5g20370 serine-rich protein-related C.G. S.X.
0.41 8e-99 361 Ptp.2362.1.A1_at DN483644 hypothetical protein - 8e-2 At1g67910 unknown protein C.G. S.X.
0.02 6e-1 36 PtpAffx.43906.1.A1_at CV253972 hypothetical protein - 4e-7 At2g28200 nucleic acid binding / transcription factor/ zinc ion binding C.G. S.X.
0.02 6e-1 36 PtpAffx.37675.1.A1_at CV242518 - - 2e+0 At3g06895 unknown protein C.G. S.X.
0.03 6e-1 36 PtpAffx.209554.1.S1_at pmrna18921 hypothetical protein - 3e+0 At4g35480 RHA3B C.G. S.X.
0.03 6e-1 36 PtpAffx.209554.1.S1_x_at pmrna18921 hypothetical protein - 3e+0 At4g35480 RHA3B C.G. S.X.
0.02 6e-1 36 PtpAffx.157531.1.S1_at BI073008 hypothetical protein - 1e+0 At4g13540 unknown protein C.G. S.X.
0.02 2e+0 34 PtpAffx.94964.1.A1_at CV265124 hypothetical protein - 9e-30 At4g16845 VRN2 (REDUCED VERNALIZATION RESPONSE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-1 38 Arabidopsis thaliana At1g67910 843119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.7940.1.A1_at CD390662 - - 5e+0 At4g25080 CHLM (magnesium-protoporphyrin IX methyltransferase) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare EBes01_SQ002_A24_s_at EBes01_SQ002_A24 - - 8e-4 At5g57120 - C.G. S.X.
0.02 3e+0 34 Oryza sativa Os.28549.1.S1_at - - - 0 C.G. S.X.
0.03 7e+0 32 Triticum aestivum Ta.28848.1.S1_at BQ579494 - - 4e+0 At1g18970 GLP4 (GERMIN-LIKE PROTEIN 4) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1617942_at CF513248 - - 1e+0 At4g19830 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.943.1.S1_at AI820396 - - 2e+0 At5g62290 nucleotide-sensitive chloride conductance regulator (ICln) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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