Gene omics information

Query gene ID	Ptp.2592.2.S1_x_at
Gene name	thioredoxin h
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	Ptp.2592.2.S1_x_at	CX185841	thioredoxin h	-	8e-6	At1g45145	ATTRX5	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.5082.1.A1_at	CV262317	-	-	2e-1	At1g05205	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.2792.1.S1_at	CN524220	ATP/ADP transporter	-	2e-24	At1g15500	ATNTT2	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.33582.1.A1_a_at	BP934623	hypothetical protein	-	2e-16	At4g13010	oxidoreductase, zinc-binding dehydrogenase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.20736.1.S1_at	BP932567	-	-	0	Atcg00020	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.209435.1.S1_at	pmrna18682	hypothetical protein	-	3e-66	At5g04360	ATLDA (LIMIT DEXTRINASE)	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.5179.2.A1_at	CV254168	hypothetical protein	-	1e-10	At3g58670	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	97.7	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.5	97.1	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.7	96.3	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.7	96.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	0	1029	Ptp.2592.3.S1_x_at	CV281081	thioredoxin h	-	9e-9	At1g19730	ATTRX4	C.G.	S.X.	Please selecteFP Browser (expression)
0.32	2e-102	373	Ptp.2203.1.S1_at	CV267942	-	-	2e-9	At1g19730	ATTRX4	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	6e-100	365	PtpAffx.96420.1.S1_at	AJ767905	thioredoxin h	-	2e+0	At2g09840	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.46	3e-98	359	PtpAffx.37138.1.S1_s_at	CV264244	thioredoxin h	-	3e-7	At1g19730	ATTRX4	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	7e-78	291	Ptp.2520.2.S1_s_at	CK092404	hypothetical protein	-	2e-10	At2g25970	KH domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	1e-76	287	PtpAffx.719.1.A1_at	CV270015	hypothetical protein	-	2e-8	At5g42980	ATTRX3 (THIOREDOXIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.35	2e-68	260	PtpAffx.147103.1.A1_at	CV251110	thioredoxin h	-	2e+0	At2g41160	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.31	2e-35	151	PtpAffx.37138.2.S1_at	CV271795	thioredoxin h	-	2e-6	At1g19730	ATTRX4	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	1e-26	121	PtpAffx.205800.1.S1_at	pmrna11463	hypothetical protein	-	1e-1	At5g42980	ATTRX3 (THIOREDOXIN 3)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	8e-6	52	Arabidopsis thaliana	At1g45145	841082	ATTRX5	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	3e-6	54	Glycine max	Gma.9838.1.S1_at	BF595182	thioredoxin h1	-	6e-15	At3g51030	ATTRX1	C.G.	S.X.	Please select
0.03	4e+0	32	Hordeum vulgare	HW05O07u_at	HW05O07u	-	-	2e+0	At1g16770	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	34	Oryza sativa	Os10g0360500	9638.m01812	-	-	6e+0	At3g58000	VQ motif-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e+0	34	Triticum aestivum	Ta.26879.1.A1_at	CD491557	-	-	1e+0	At3g22530	unknown protein	C.G.	S.X.	Please select
0.11	7e-19	93	Vitis vinifera	1620052_x_at	CF205391.1	hypothetical protein LOC100250566	-	3e-4	At1g19730	ATTRX4	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	ZmAffx.174.1.A1_at	AI668269	SAUR12 - auxin-responsive SAUR family member	-	3e+0	At5g59060	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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