Gene omics information

Query gene ID Ptp.2568.1.S1_s_at
Gene name 3-phosphoshikimate 1-carboxyvinyltransferase
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5683.9Ptp.2568.1.S1_s_atCV2463193-phosphoshikimate 1-carboxyvinyltransferase-7e-53At1g488603-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putativeS.X.H.G.
0.3559.7Ptp.7532.1.S1_atBU832220hypothetical protein-3e-39At2g47110UBQ6S.X.H.G.
0.2645.2PtpAffx.202195.1.S1_atpmrna4389hypothetical protein-2e-20At3g61140FUS6 (FUSCA 6)S.X.H.G.
0.2543.6Ptp.374.1.A1_a_atCV258753hypothetical protein-2e-36At4g18040EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)S.X.H.G.
0.2441.8Ptp.5627.1.S1_atCV239208hypothetical protein-4e-81At1g07770RPS15A (ribosomal protein s15a)S.X.H.G.
0.1729.1Ptp.1932.1.A1_atCK093169hypothetical protein-4e-1At2g32500-S.X.H.G.
0.1626.9PtpAffx.145773.1.S1_atBI131428hypothetical protein-6e-41At3g15060AtRABA1g (Arabidopsis Rab GTPase homolog A1g)S.X.H.G.
0.1525.3PtpAffx.32840.2.S1_atCV234222--3e-21At1g29470dehydration-responsive protein-relatedS.X.H.G.
0.1219.6Ptp.2046.1.A1_atBU836412--7e-27At1g19580GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)S.X.H.G.
0.1016.3PtpAffx.18825.3.A1_atCV230059hypothetical protein-3e-15At5g12190RNA recognition motif (RRM)-containing proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
16.599.6GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue series
8.398.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue series
3.694.5GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
2.590.9GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
2.389.8GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
2.188.6GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
2.188.6GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.204e-123442Ptp.6462.1.S1_s_atCF2327853-phosphoshikimate 1-carboxyvinyltransferase-1e-63At1g488603-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putativeC.G.S.X.
0.125e-859PtpAffx.153418.1.A1_atCV258125--1e+0At3g49310-C.G.S.X.
0.012e-138PtpAffx.217804.1.S1_atpmrna33212hypothetical protein-7e-1At5g40370glutaredoxin, putativeC.G.S.X.
0.028e-136PtpAffx.77039.1.A1_atCV226829hypothetical protein-5e-1At5g23100unknown proteinC.G.S.X.
0.028e-136PtpAffx.28432.1.S1_atCV241400--6e-7At2g37410ATTIM17-2C.G.S.X.
0.018e-136PtpAffx.208662.1.S1_atpmrna17184hypothetical protein-3e-170At3g26370unknown proteinC.G.S.X.
0.023e+034PtpAffx.86620.2.S1_atCV241189--1e+0At2g40410Ca(2+)-dependent nuclease, putativeC.G.S.X.
0.023e+034PtpAffx.66325.1.S1_atBU874115--4e-10At5g61790calnexin 1 (CNX1)C.G.S.X.
0.013e+034PtpAffx.211395.1.S1_atpmrna22334hypothetical protein-1e+0At5g40370glutaredoxin, putativeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.437e-53208Arabidopsis thalianaAt1g488608413083-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putativeF:3-phosphoshikimate 1-carboxyvinyltransferase activity, catalytic activity, transferase activity, transferring alkyl or aryl (other than methyl) groups;P:glyphosate metabolic process, aromatic amino acid family biosynthetic process;C:chloroplast;BOPAFM---C.G.S.X.
0.484e-135482Glycine maxGma.10326.1.S1_s_atCD414575--6e-60At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseC.G.S.X.
0.037e-238Hordeum vulgareContig10252_s_atContig10252--3e+0At5g65000nucleotide-sugar transporter family proteinC.G.S.X.
0.212e-29131Oryza sativaOs06g0133900AB016765.1-5-enolpyruvylshikimate-3-phosphate synthase (EC2.5.1.19) (Fragment)2e-35At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseC.G.S.X.
0.251e-23111Triticum aestivumTa.26746.1.A1_atCD491034--9e-36At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseC.G.S.X.
0.456e-109393Vitis vinifera1615742_atCB9706705-enolpyruvylshikimate-3-phosphate synthase-8e-121At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseC.G.S.X.
0.231e-1893Zea maysZm.98.1.S1_atAY106729.13-phosphoshikimate 1-carboxyvinyltransferase-2e-48At1g488603-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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