Gene omics information

Query gene ID	Ptp.2558.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	Ptp.2558.1.S1_at	CK096344	hypothetical protein	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.7787.1.S1_s_at	DN499212	-	-	4e+0	At2g05642	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.28339.1.S1_at	CV264979	hypothetical protein	-	1e-29	At4g38790	ER lumen protein retaining receptor family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.43623.2.A1_a_at	CV227115	hypothetical protein	-	7e-5	At3g03610	phagocytosis and cell motility protein ELMO1-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.135882.1.A1_at	CV281275	hypothetical protein	-	1e-7	At1g78420	protein binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.2672.1.A1_at	CV254014	hypothetical protein	-	1e-67	At1g51590	mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.2	95.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	0	1766	PtpAffx.8652.1.S1_at	CV234413	-	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.62	0	1146	Ptp.4622.1.S1_s_at	BP930041	hypothetical protein	-	7e-93	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.56109.1.S1_a_at	CX169779	hypothetical protein	-	3e-3	At4g09560	peptidase/ protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.23710.1.S1_at	DN490931	hypothetical protein	-	2e-35	At1g48260	CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.223064.1.S1_x_at	pmrna40861	hypothetical protein	-	8e-2	At5g65700	BAM1 (BARELY ANY MERISTEM 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.208431.1.S1_at	pmrna16750	hypothetical protein	-	1e-61	At1g48260	CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.208431.1.S1_s_at	pmrna16750	hypothetical protein	-	1e-61	At1g48260	CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.203519.1.S1_at	pmrna6993	AP2 domain-containing transcription factor	-	2e-94	At1g51190	PLT2 (PLETHORA 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e-1	38	PtpAffx.200171.1.S1_s_at	pmrna319	AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor	-	1e-98	At1g51190	PLT2 (PLETHORA 2)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	0	706	Arabidopsis thaliana	At1g78900	844228	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	Encodes catalytic subunit A of the vacuolar ATP synthase. Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.46	0	831	Glycine max	Gma.1434.1.S1_at	AW349400	-	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please select
0.37	9e-110	397	Hordeum vulgare	Contig2786_at	Contig2786	-	-	2e-147	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please select
0.34	3e-51	204	Oryza sativa	Os02g0175400	AK067063.1	-	Vacuolar proton-ATPase	5e-89	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.29	2e-96	353	Triticum aestivum	Ta.2650.1.S1_x_at	CK156172	vacuolar proton-ATPase subunit A	-	2e-141	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please select
0.48	2e-168	591	Vitis vinifera	1606457_at	CB975875	hypothetical protein LOC100261512	-	3e-111	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please select
0.34	2e-70	266	Zea mays	Zm.6945.1.A1_at	AY104754.1	vacuolar proton pump3	-	2e-101	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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