Gene omics information

Query gene ID	Ptp.2482.1.S1_at
Gene name	phenylalanine amonnia lyase
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	Ptp.2482.1.S1_at	CF229547	phenylalanine amonnia lyase	-	2e-2	At2g37040	pal1 (Phe ammonia lyase 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.1092.1.A1_s_at	CV234329	hypothetical protein	-	7e+0	At5g26050	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.7604.3.S1_at	CF228086	-	-	4e-1	At1g70350	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.1092.4.A1_at	CV250470	hypothetical protein	-	6e-3	At5g15581	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.5999.1.S1_at	BU886555	hypothetical protein	-	1e-13	At4g11820	MVA1	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.203517.1.S1_s_at	pmrna6989	hypothetical protein	-	2e-1	At3g49645	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.8	98.9	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.7	98.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.1	98.7	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.6	98.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
7.0	98.0	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.3	97.7	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	0	728	PtpAffx.2272.1.S1_a_at	AY372451.1	phenylalanine amonnia lyase	-	1e-49	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.59	0	708	PtpAffx.2272.4.S1_a_at	CV263762	phenylalanine amonnia lyase	-	3e-2	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	7e-86	317	Ptp.3185.1.S1_x_at	AF480620.1	phenylalanine amonnia lyase	-	2e-33	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	7e-86	317	Ptp.3185.1.S1_at	AF480620.1	phenylalanine amonnia lyase	-	2e-33	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	1e-25	117	Ptp.4730.1.A1_s_at	CV267232	-	-	1e-10	At3g53260	PAL2	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	2e-21	103	PtpAffx.1672.3.A1_a_at	CV271667	phenylalanine amonnia lyase	-	1e-3	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.09	5e-16	85	PtpAffx.1672.2.A1_x_at	AF480619.1	-	-	8e-24	At2g37040	pal1 (Phe ammonia lyase 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.12226.1.S1_at	CV233805	hypothetical protein	-	5e-57	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e-1	36	PtpAffx.111030.1.S1_at	DN487930	hypothetical protein	-	5e-16	At1g22882	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-2	40	Arabidopsis thaliana	At2g37040	818280	pal1 (Phe ammonia lyase 1)	encodes a protein similar to phenylalanine ammonia-lyase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	4e-7	56	Glycine max	GmaAffx.93094.1.S1_s_at	CF805936	-	-	5e+0	At3g05810	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HVSMEi0021C18r2_s_at	HVSMEi0021C18r2	-	-	2e+0	At4g03140	binding / catalytic/ oxidoreductase	C.G.	S.X.	Please select
0.05	5e-1	36	Oryza sativa	OsAffx.2507.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Triticum aestivum	TaAffx.109039.1.S1_at	CA680922	-	-	1e+0	At3g19410	F-box family protein	C.G.	S.X.	Please select
0.25	1e-28	125	Vitis vinifera	1613113_at	CK136925.1	phenylalanine ammonia-lyase	-	1e+0	At1g57850	Toll-Interleukin-Resistance (TIR) domain-containing protein	C.G.	S.X.	Please select
0.04	1e-1	36	Zea mays	Zm.15903.2.A1_at	BM266872	-	-	2e-11	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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