CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.2453.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 Ptp.2453.1.S1_at CV284013 hypothetical protein - 2e-28 At5g52240 MSBP1 (membrane steroid binding protein 1) S.X. H.G.
0.73 93.6 PtpAffx.4784.1.A1_s_at CV268464 hypothetical protein - 8e+0 At5g27290 unknown protein S.X. H.G.
0.71 92.6 Ptp.7476.1.A1_s_at CK111860 hypothetical protein - 4e-42 At1g20110 zinc finger (FYVE type) family protein S.X. H.G.
0.67 91.1 Ptp.4943.1.S1_at CV249629 hypothetical protein - 2e-99 At1g20090 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) S.X. H.G.
0.57 84.2 PtpAffx.6505.1.A1_s_at CV238517 hypothetical protein - 2e-36 At3g25800 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) S.X. H.G.
0.47 74.6 Ptp.5592.1.S1_at AF272572.1 hypothetical protein - 5e-82 At5g38480 GRF3 (GENERAL REGULATORY FACTOR 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.3 89.8 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.5 83.5 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.5 83.5 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
1.5 83.5 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.4 82.3 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
1.4 82.3 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.4 82.3 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.62 0 841 Ptp.3368.1.S1_at CX656527 hypothetical protein - 1e-32 At5g52240 MSBP1 (membrane steroid binding protein 1) C.G. S.X.
0.13 1e-8 61 PtpAffx.213011.1.S1_at pmrna25442 hypothetical protein - 2e-12 At3g48890 ATMP2 C.G. S.X.
0.06 1e-2 42 PtpAffx.6105.4.S1_at CV266789 hypothetical protein - 7e-2 At3g48890 ATMP2 C.G. S.X.
0.07 2e-1 38 PtpAffx.6105.3.S1_at AJ768119 hypothetical protein - 3e-4 At3g48890 ATMP2 C.G. S.X.
0.02 2e-1 38 PtpAffx.206244.1.S1_at pmrna12387 hypothetical protein - 6e-1 At1g67070 DIN9 (DARK INDUCIBLE 9) C.G. S.X.
0.02 7e-1 36 PtpAffx.5528.1.A1_at CV244792 - - 4e-1 At1g26140 unknown protein C.G. S.X.
0.02 7e-1 36 PtpAffx.215951.1.S1_at pmrna30431 hypothetical protein - 1e+0 At2g26940 zinc finger (C2H2 type) family protein C.G. S.X.
0.01 3e+0 34 PtpAffx.211887.1.S1_s_at pmrna23342 hypothetical protein - 1e-3 At2g05810 armadillo/beta-catenin repeat family protein C.G. S.X.
0.01 3e+0 34 PtpAffx.204708.1.S1_at pmrna9277 hypothetical protein - 9e-14 At4g34280 transducin family protein / WD-40 repeat family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 2e-28 127 Arabidopsis thaliana At5g52240 835300 MSBP1 (membrane steroid binding protein 1) Encodes a protein with similarity to progesterone-binding proteins in animals. Has been shown to bind steroids in vitro. Expressed in aerial portions of the plant excluding mature flowers and siliques. Antisense experiments suggest a role in inhibition of hypocotyl cell elongation. Expression is suppressed light grown seedlings transferred to the dark. - - - C.G. S.X.
0.22 5e-57 222 Glycine max Gma.1144.2.S1_at BE821744 - - 3e-42 At3g48890 ATMP2 C.G. S.X.
0.16 2e-11 69 Hordeum vulgare Contig10724_at Contig10724 - - 1e-10 At3g48890 ATMP2 C.G. S.X.
0.17 8e-20 99 Oryza sativa Os10g0502600 AK069511.1 - Cytochrome b5 domain containing protein 4e-26 At3g48890 ATMP2 C.G. S.X.
0.21 2e-15 83 Triticum aestivum Ta.6101.2.S1_a_at CA697971 - - 3e-16 At3g48890 ATMP2 C.G. S.X.
0.30 1e-57 222 Vitis vinifera 1621874_x_at CF204991.1 - - 2e-23 At5g52240 MSBP1 (membrane steroid binding protein 1) C.G. S.X.
0.09 1e-8 59 Zea mays Zm.14411.1.A1_a_at AI491646 membrane steroid-binding protein 1 - 7e-16 At3g48890 ATMP2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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