CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.2432.1.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 84.9 Ptp.2432.1.S1_a_at CK093484 hypothetical protein - 4e-19 At4g27745 - S.X. H.G.
0.25 43.6 PtpAffx.221207.1.S1_at pmrna37916 cytochrome P450 - 7e-1 At4g37310 CYP81H1 S.X. H.G.
0.23 40.5 Ptp.2035.1.S1_s_at BU894397 hypothetical protein - 3e-21 At4g24060 Dof-type zinc finger domain-containing protein S.X. H.G.
0.11 18.1 PtpAffx.25959.1.S1_at DN498122 hypothetical protein - 2e+0 At5g20160 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein S.X. H.G.
0.10 16.3 PtpAffx.7399.1.S1_at CV242228 hypothetical protein - 2e-12 At4g23980 ARF9 (AUXIN RESPONSE FACTOR 9) S.X. H.G.
0.05 8.3 PtpAffx.49841.1.A1_at CV243029 hypothetical protein - 9e-24 At2g24260 basic helix-loop-helix (bHLH) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.4 99.3 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.5 96.1 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.69 2e-117 422 PtpAffx.97650.1.S1_at CV229139 hypothetical protein - 1e-15 At4g27745 - C.G. S.X.
0.39 2e-58 226 PtpAffx.200345.1.S1_s_at pmrna680 hypothetical protein - 2e-17 At4g27745 - C.G. S.X.
0.04 2e-3 44 PtpAffx.80282.1.S1_at DN493986 hypothetical protein - 3e+0 At3g03870 unknown protein C.G. S.X.
0.06 2e-3 44 PtpAffx.35380.1.S1_a_at CV256335 hypothetical protein - 1e+0 Atmg00900 - C.G. S.X.
0.09 2e-3 44 PtpAffx.211628.1.S1_at pmrna22788 hypothetical protein - 1e-2 At4g27745 - C.G. S.X.
0.03 8e-3 42 PtpAffx.204214.1.S1_at pmrna8291 hypothetical protein - 2e+0 At4g27410 RD26 (RESPONSIVE TO DESICCATION 26) C.G. S.X.
0.03 8e-3 42 PtpAffx.204216.1.S1_at pmrna8293 hypothetical protein - 1e+0 At4g27410 RD26 (RESPONSIVE TO DESICCATION 26) C.G. S.X.
0.02 1e-1 38 PtpAffx.219820.1.S1_at pmrna35949 glycosyltransferase - 2e-19 At2g38650 GAUT7 (GALACTURONOSYLTRANSFERASE 7) C.G. S.X.
0.01 1e-1 38 PtpAffx.213752.1.S1_at pmrna26858 glycosyltransferase, CAZy family GT8 - 5e-18 At2g38650 GAUT7 (GALACTURONOSYLTRANSFERASE 7) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 4e-19 95 Arabidopsis thaliana At4g27745 3770406 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO - - - C.G. S.X.
0.39 2e-62 240 Glycine max Gma.2174.1.S1_at BE822605 - - 6e-9 At4g27745 - C.G. S.X.
0.08 7e-1 34 Hordeum vulgare Contig10932_at Contig10932 - - 8e-15 At4g27745 - C.G. S.X.
0.23 5e-20 99 Oryza sativa Os12g0484700 AK121352.1 - Yippee-like protein family protein 3e-5 At4g27745 - C.G. S.X.
0.03 1e+0 34 Triticum aestivum TaAffx.86985.1.S1_at CA597640 - - 4e+0 At2g32360 ubiquitin family protein C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1620462_at CD801647 hypothetical protein LOC100259215 - 4e+0 At5g37870 seven in absentia (SINA) family protein C.G. S.X.
0.15 4e-14 77 Zea mays Zm.5188.1.S1_at AW400008 protein yippee-like - 6e-3 At4g27745 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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