CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.2351.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 Ptp.2351.1.S1_s_at CF936500 hypothetical protein - 2e-6 At4g30010 unknown protein S.X. H.G.
0.91 99.2 Ptp.6392.1.S1_x_at CN519280 hypothetical protein - 2e-24 At5g64400 - S.X. H.G.
0.91 99.2 Ptp.6571.1.S1_at CN520713 - - 2e-10 At5g47030 ATP synthase delta' chain, mitochondrial S.X. H.G.
0.91 99.2 Ptp.2132.2.A1_a_at CV273144 hypothetical protein - 9e-1 At2g45740 PEX11D S.X. H.G.
0.80 96.0 Ptp.6392.1.S1_at CN519280 hypothetical protein - 2e-24 At5g64400 - S.X. H.G.
0.56 83.9 PtpAffx.25435.1.A1_x_at CV233869 hypothetical protein - 2e+0 At5g43460 lesion inducing protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.0 97.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.98 0 1243 Ptp.2351.1.S1_at CF936500 hypothetical protein - 2e-6 At4g30010 unknown protein C.G. S.X.
0.67 3e-132 472 Ptp.7460.1.S1_at BU814901 hypothetical protein - 5e+0 At1g03660 - C.G. S.X.
0.01 5e-1 36 PtpAffx.212660.1.S1_at pmrna24771 hypothetical protein - 2e-48 At1g18410 kinesin motor protein-related C.G. S.X.
0.01 5e-1 36 PtpAffx.200127.1.S1_at pmrna237 hypothetical protein - 4e-62 At3g07960 phosphatidylinositol-4-phosphate 5-kinase family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.211437.1.S1_at pmrna22410 hypothetical protein - 1e-11 At5g58680 armadillo/beta-catenin repeat family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.211437.1.S1_s_at pmrna22410 hypothetical protein - 1e-11 At5g58680 armadillo/beta-catenin repeat family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.206168.1.S1_at pmrna12241 hypothetical protein - 3e-15 At3g10700 GHMP kinase family protein C.G. S.X.
0.02 8e+0 32 PtpAffx.56522.1.A1_at CV262002 hypothetical protein - 6e-7 At5g02850 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 8e+0 32 PtpAffx.54760.1.A1_at DN488946 hypothetical protein - 3e-11 At5g28020 CYSD2 (CYSTEINE SYNTHASE D2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-6 54 Arabidopsis thaliana At4g30010 829124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;P - - - C.G. S.X.
0.06 4e-2 40 Glycine max Gma.17047.1.S1_s_at AW350843 - - 6e+0 At4g03290 calcium-binding protein, putative C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig19947_s_at Contig19947 - - 2e-1 At2g40510 40S ribosomal protein S26 (RPS26A) C.G. S.X.
0.03 3e+0 34 Oryza sativa Os.51153.1.S1_at - - - 0 C.G. S.X.
0.03 6e+0 32 Triticum aestivum Ta.26076.1.A1_at CD452493 - - 1e-3 At1g76690 OPR2 C.G. S.X.
0.08 1e-4 46 Vitis vinifera 1610173_at CF204751.1 - - 4e-4 At4g30010 unknown protein C.G. S.X.
0.03 3e+0 32 Zea mays ZmAffx.933.1.S1_at AI795521 - - 3e+0 At5g18100 CSD3 (copper/zinc superoxide dismutase 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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