Gene omics information

Query gene ID	Ptp.2344.1.A1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	Ptp.2344.1.A1_x_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.54956.1.A1_s_at	BP934948	hypothetical protein	-	5e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	Ptp.2344.1.A1_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.35633.1.A1_at	CV274877	nbs-lrr resistance protein	-	1e-1	At5g35610	paired amphipathic helix repeat-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.138996.1.S1_at	CX182529	nbs-lrr resistance protein	-	9e-15	At5g04720	ADR1-L2 (ADR1-like 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	Ptp.4795.1.S1_s_at	CA925817	nbs-lrr resistance protein	-	2e-3	At5g04720	ADR1-L2 (ADR1-like 2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.6	99.2	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
9.8	98.9	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
9.7	98.9	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
7.7	98.3	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
6.0	97.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.7	94.7	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3	93.7	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2742	Ptp.2344.1.A1_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.69	0	1505	PtpAffx.249.26.A1_s_at	BP933372	hypothetical protein	-	1e-8	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.57	0	956	PtpAffx.43381.1.A1_at	CV274494	-	-	4e-1	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.56	0	704	PtpAffx.249.187.S1_at	BP933230	-	-	5e-5	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	2e-140	500	PtpAffx.54956.1.A1_s_at	BP934948	hypothetical protein	-	5e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	1e-80	301	Ptp.83.2.S1_s_at	CN549780	hypothetical protein	-	2e-6	At2g41480	electron carrier/ heme binding / peroxidase	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	2e-63	244	PtpAffx.249.100.A1_x_at	CX175247	hypothetical protein	-	9e-9	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.38	2e-63	244	PtpAffx.249.100.A1_s_at	CX175247	hypothetical protein	-	9e-9	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)
0.16	5e-55	216	PtpAffx.249.379.S1_at	CV230618	-	-	1e-8	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-4	48	Arabidopsis thaliana	At1g71695	843498	peroxidase 12 (PER12) (P12) (PRXR6)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, vacuole, membrane, plant-type cell wall;PFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	8e-14	79	Glycine max	Gma.4305.1.S1_at	AW350687	-	-	4e-5	At3g49120	PRXCB (PEROXIDASE CB)	C.G.	S.X.	Please select
0.03	2e-2	40	Hordeum vulgare	Contig12944_at	Contig12944	-	-	2e-3	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.03	1e-1	40	Oryza sativa	Os01g0963200	9629.m07251	-	Peroxidase BP 1 precursor	1e-7	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e-4	46	Triticum aestivum	TaAffx.110390.1.S1_at	CA659431	-	-	1e-3	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.28	8e-32	137	Vitis vinifera	1609321_at	CA817974	hypothetical protein LOC100241916	-	7e-7	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please select
0.03	5e-3	42	Zea mays	Zm.4338.1.A1_at	CF638243	peroxidase 72	-	1e-8	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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