Gene omics information

Query gene ID	Ptp.2290.1.S1_x_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.38	63.7	Ptp.2290.1.S1_x_at	CV278722	hypothetical protein	-	6e-28	At1g09590	60S ribosomal protein L21 (RPL21A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	Ptp.1365.1.S1_at	CV279589	hypothetical protein	-	4e-23	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.8802.1.S1_a_at	CK096733	hypothetical protein	-	1e-4	At1g76940	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.115389.1.S1_s_at	AJ779828	hypothetical protein	-	2e-45	At1g26550	peptidyl-prolyl cis-trans isomerase PPIC-type family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.4240.2.A1_a_at	CA927596	hypothetical protein	-	2e-27	At3g18880	ribosomal protein S17 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.8141.1.S1_at	CV250890	hypothetical protein	-	2e-83	At5g08290	YLS8	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.0	88.0	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	1223	Ptp.2290.1.S1_at	CV278722	hypothetical protein	-	6e-28	At1g09590	60S ribosomal protein L21 (RPL21A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.90	0	1223	Ptp.2290.1.S1_s_at	CV278722	hypothetical protein	-	6e-28	At1g09590	60S ribosomal protein L21 (RPL21A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.59	0	747	PtpAffx.17310.1.S1_at	CV251060	hypothetical protein	-	2e-27	At1g09590	60S ribosomal protein L21 (RPL21A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	1e-39	165	PtpAffx.6684.3.A1_a_at	CV241957	hypothetical protein	-	2e-6	At4g14570	acylaminoacyl-peptidase-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.47	4e-39	163	Ptp.47.1.A1_at	CV247254	hypothetical protein	-	7e-49	At1g57860	60S ribosomal protein L21	C.G.	S.X.	Please selecteFP Browser (expression)
0.28	5e-20	99	PtpAffx.61857.1.S1_at	CV259276	hypothetical protein	-	6e-43	At1g57860	60S ribosomal protein L21	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.224674.1.S1_at	pmrna43452	hypothetical protein	-	3e-1	At3g47090	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.78625.1.S1_at	BU896560	hypothetical protein	-	2e-37	At3g52180	SEX4 (STARCH-EXCESS 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.249.639.S1_a_at	CV239323	hypothetical protein	-	2e-2	At2g23310	ATRER1C1	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	6e-28	125	Arabidopsis thaliana	At1g09590	837486	60S ribosomal protein L21 (RPL21A)	F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, chloroplast;MOAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	4e-48	192	Glycine max	Gma.11048.1.S1_at	AW309369	-	-	2e-40	At1g09690	60S ribosomal protein L21 (RPL21C)	C.G.	S.X.	Please select
0.26	2e-41	169	Hordeum vulgare	Contig1476_at	Contig1476	-	-	7e-49	At1g09690	60S ribosomal protein L21 (RPL21C)	C.G.	S.X.	Please select
0.41	2e-54	214	Oryza sativa	Os10g0465800	AF093630.1	-	60S ribosomal protein L21 [Oryza sativa (japonicacultivar-group)]	3e-42	At1g09690	60S ribosomal protein L21 (RPL21C)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.29	3e-33	143	Triticum aestivum	Ta.30787.1.S1_at	BQ802485	-	-	6e-38	At1g09690	60S ribosomal protein L21 (RPL21C)	C.G.	S.X.	Please select
0.46	1e-44	178	Vitis vinifera	1611008_at	CF200658.1	hypothetical protein LOC100262509	-	9e-30	At1g57660	60S ribosomal protein L21 (RPL21E)	C.G.	S.X.	Please select
0.30	2e-44	178	Zea mays	Zm.7080.3.A1_at	BM382181	hypothetical protein LOC100192855	-	2e-18	At1g09690	60S ribosomal protein L21 (RPL21C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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