Gene omics information

Query gene ID	Ptp.2232.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	Ptp.2232.1.S1_at	CK089340	-	-	5e+0	At4g11040	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.48049.1.S1_at	DN489796	hypothetical protein	-	5e+0	At5g24410	glucosamine/galactosamine-6-phosphate isomerase-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.3760.1.S1_at	BU886519	hypothetical protein	-	2e+0	At5g37900	seven in absentia (SINA) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.31469.1.A1_at	DN493005	hypothetical protein	-	2e-40	At1g66460	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.13675.1.A1_at	CK096286	-	-	4e+0	At3g04090	SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.729.1.A1_at	CK088305	-	-	2e+0	At1g08930	ERD6 (EARLY RESPONSE TO DEHYDRATION 6)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.6	99.2	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.5	98.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.9	98.7	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.5	97.1	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	32	PtpAffx.69905.1.A1_at	CV245342	hypothetical protein	-	4e-27	At4g12790	ATP-binding family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e+0	32	PtpAffx.30460.1.A1_at	CV275205	-	-	3e-1	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	32	PtpAffx.225214.1.S1_at	pmrna44394	hypothetical protein	-	2e+0	At4g33520	PAA1 (P-TYPE ATP-ASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e+0	30	PtpAffx.58775.1.A1_at	CK091151	hypothetical protein	-	6e-3	At3g55340	PHIP1 (PHRAGMOPLASTIN INTERACTING PROTEIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e+0	30	PtpAffx.211912.1.S1_at	pmrna23397	histidine kinase cytokinin receptor	-	3e-69	At5g35750	AHK2 (ARABIDOPSIS HISTIDINE KINASE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e+0	30	PtpAffx.210745.1.S1_at	pmrna21077	hypothetical protein	-	4e-1	At3g30320	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	30	PtpAffx.201967.1.S1_at	pmrna3927	sucrose proton symporter	-	1e-30	At1g09960	SUT4 (SUCROSE TRANSPORTER 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	7e+0	30	Ptp.6178.3.S1_at	CV272957	hypothetical protein	-	1e-6	At1g21065	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e+1	28	PtpAffx.9780.1.A1_at	DN490439	hypothetical protein	-	1e+0	At3g53490	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	30	Arabidopsis thaliana	At4g11040	826705	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;POMFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	7e+0	30	Glycine max	Gma.6617.1.S1_at	BQ629224	-	-	2e+0	At5g06190	unknown protein	C.G.	S.X.	Please select
0.07	1e+1	28	Hordeum vulgare	HK06M08r_at	HK06M08r	-	-	6e+0	At5g01810	CIPK15 (CBL-INTERACTING PROTEIN KINASE 15)	C.G.	S.X.	Please select
0.09	3e+0	32	Oryza sativa	OsAffx.31319.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-1	34	Triticum aestivum	TaAffx.56692.1.S1_at	CA646511	-	-	1e+0	At5g21090	leucine-rich repeat protein, putative	C.G.	S.X.	Please select
0.04	6e+0	28	Vitis vinifera	1620669_at	CF510888	-	-	1e+0	At3g46770	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.05	9e+0	28	Zea mays	ZmAffx.754.1.A1_at	AI745921	-	-	2e-1	At1g33960	AIG1 (AVRRPT2-INDUCED GENE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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