Gene omics information

Query gene ID	Ptp.2171.1.S1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	Ptp.2171.1.S1_a_at	CV227774	hypothetical protein	-	3e-32	At3g12560	TRFL9 (TRF-LIKE 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.1557.2.S1_s_at	BI120353	-	-	1e-3	At4g17730	SYP23 (SYNTAXIN OF PLANTS 23)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	Ptp.4875.1.A1_a_at	CV283196	hypothetical protein	-	4e-4	At4g13020	MHK	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.51.1.A1_at	CV257322	hypothetical protein	-	3e-9	At5g12310	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.63326.1.A1_at	CV244522	hypothetical protein	-	5e-16	At2g35100	ARAD1 (ARABINAN DEFICIENT 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.8063.1.S1_at	CK096400	hypothetical protein	-	4e-27	At5g53140	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	97.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.4	97.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	3e-39	163	PtpAffx.7050.1.S1_at	CV268085	hypothetical protein	-	1e-38	At1g07540	TRFL2 (TRF-LIKE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	3e-39	163	PtpAffx.7050.1.S1_a_at	CV268085	hypothetical protein	-	1e-38	At1g07540	TRFL2 (TRF-LIKE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.28	3e-30	133	PtpAffx.206246.1.S1_at	pmrna12394	hypothetical protein	-	3e-26	At1g07540	TRFL2 (TRF-LIKE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.24	1e-13	77	PtpAffx.7050.2.S1_at	BU891302	hypothetical protein	-	1e-16	At1g07540	TRFL2 (TRF-LIKE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	1e-1	38	PtpAffx.204229.1.S1_at	pmrna8317	hypothetical protein	-	3e-46	At2g21590	APL4	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.8196.1.S1_a_at	BU887494	-	-	5e-1	At2g42380	bZIP transcription factor family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.222734.1.S1_at	pmrna40350	hypothetical protein	-	1e-1	At1g60420	DC1 domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	Ptp.5666.1.S1_s_at	CV262886	hypothetical protein	-	5e-4	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	Ptp.1967.1.S1_at	CK088156	hypothetical protein	-	3e-36	At1g04910	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	3e-32	139	Arabidopsis thaliana	At3g12560	820436	TRFL9 (TRF-LIKE 9)	Encodes a telomeric DNA-binding protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	6e-62	238	Glycine max	Gma.1416.1.S1_at	BG043439	-	-	4e-30	At3g12560	TRFL9 (TRF-LIKE 9)	C.G.	S.X.	Please select
0.10	5e-11	67	Hordeum vulgare	Contig15230_at	Contig15230	-	-	2e-11	At5g59430	TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.04	7e-1	36	Oryza sativa	OsAffx.30267.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	1e-13	77	Triticum aestivum	Ta.7357.1.S1_at	BJ318958	-	-	1e-14	At5g59430	TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.16	3e-23	107	Vitis vinifera	1606583_at	CB979156	hypothetical protein LOC100257090	-	5e-14	At3g46590	TRFL1 (TRF-LIKE 1)	C.G.	S.X.	Please select
0.03	6e-7	54	Zea mays	Zm.4967.1.A1_at	CF043925	initiator-binding protein	-	2e-12	At3g46590	TRFL1 (TRF-LIKE 1)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage