Gene omics information

Query gene ID	Ptp.2146.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	97.0	Ptp.2146.1.S1_at	CK088192	hypothetical protein	-	5e-109	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.6303.1.S1_at	CV274575	hypothetical protein	-	1e-1	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.53	80.5	Ptp.4737.1.A1_s_at	CV264357	hypothetical protein	-	2e-20	At5g56090	COX15 (cytochrome c oxidase 15)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.211304.1.S1_s_at	pmrna22167	hypothetical protein	-	4e-119	At5g08415	lipoic acid synthase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.6136.1.S1_s_at	CV255819	hypothetical protein	-	2e-34	At3g48680	GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.4082.3.S1_a_at	AJ767758	porin/voltage-dependent anion-selective channel protein	-	5e-3	At5g15090	VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.2	95.6	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2	95.6	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.1	95.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.83	0	1477	PtpAffx.46654.1.S1_at	BU889616	hypothetical protein	-	3e-95	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.51	4e-175	615	Ptp.2046.1.A1_at	BU836412	-	-	7e-27	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.50	3e-145	515	Ptp.4623.1.S1_at	BI131888	-	-	6e-42	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.42	3e-111	402	PtpAffx.43592.1.S1_at	CV243155	-	-	1e-85	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	PtpAffx.216898.1.S1_at	pmrna31951	-	-	4e-8	At5g60920	COB (COBRA)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	PtpAffx.216899.1.S1_s_at	pmrna31952	hypothetical protein	-	1e-17	At5g60920	COB (COBRA)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.218605.1.S1_at	pmrna34278	hypothetical protein	-	6e-3	At5g39390	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.216199.1.S1_at	pmrna30829	hypothetical protein	-	3e-7	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.212721.1.S1_at	pmrna24880	hypothetical protein	-	7e-5	At3g17920	protein binding	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	5e-109	395	Arabidopsis thaliana	At1g19580	838545	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.52	7e-152	537	Glycine max	Gma.16388.1.S1_at	CD403252	-	-	1e-42	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.29	1e-30	133	Hordeum vulgare	Contig4878_at	Contig4878	-	-	8e-19	At1g47260	GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)	C.G.	S.X.	Please select
0.50	4e-43	176	Oryza sativa	Os01g0283100	AK071713.1	-	Ferripyochelin-binding protein-like	1e-35	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	3e-24	113	Triticum aestivum	TaAffx.59244.1.S1_at	CA605451	-	-	2e-14	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.60	0	724	Vitis vinifera	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.31	2e-57	222	Zea mays	Zm.15626.1.S1_at	CA404507	-	-	1e-8	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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