CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.2081.1.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 84.2 Ptp.2081.1.A1_s_at CV272057 hypothetical protein - 6e-34 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) S.X. H.G.
0.60 86.0 PtpAffx.202105.1.S1_s_at pmrna4204 hypothetical protein - 1e-3 At3g60380 - S.X. H.G.
0.57 84.2 PtpAffx.43760.1.A1_at CK090842 - - 9e-2 At2g32080 PUR ALPHA-1 S.X. H.G.
0.50 78.6 Ptp.170.1.S1_s_at CK089230 hypothetical protein - 2e+0 At3g13660 disease resistance response S.X. H.G.
0.50 78.6 Ptp.5761.1.S1_at AI161593 hypothetical protein - 5e-29 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) S.X. H.G.
0.44 71.9 Ptp.5801.2.S1_a_at BU836809 hypothetical protein - 2e+0 At1g24440 protein binding / zinc ion binding S.X. H.G.
0.32 55.2 PtpAffx.115945.1.S1_s_at CN521589 hypothetical protein - 5e-2 At4g00355 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.3 98.2 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.9 98.0 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.8 98.0 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
6.2 97.6 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.4 97.0 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4 94.0 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-60 234 Ptp.5761.1.S1_at AI161593 hypothetical protein - 5e-29 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.39 2e-46 186 Ptp.219.1.A1_at CK096322 - - 1e-22 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.27 5e-32 139 PtpAffx.71061.1.S1_at BU892027 hypothetical protein - 2e-38 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.30 8e-28 125 PtpAffx.20863.1.A1_at BU837354 hypothetical protein - 4e-32 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.38 2e-22 107 PtpAffx.103704.1.A1_at CK095649 hypothetical protein - 1e-34 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.03 2e-3 44 PtpAffx.86377.1.S1_at CX174012 hypothetical protein - 3e-20 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) C.G. S.X.
0.02 5e-1 36 PtpAffx.2533.1.A1_at BU813838 hypothetical protein - 9e-6 At5g13810 glutaredoxin family protein C.G. S.X.
0.02 5e-1 36 PtpAffx.22568.1.A1_at CV242291 - - 4e-5 At5g16520 unknown protein C.G. S.X.
0.03 5e-1 36 PtpAffx.224276.1.S1_x_at pmrna42681 hypothetical protein - 1e-2 At1g66390 MYB90 (MYB DOMAIN PROTEIN 90) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 6e-34 145 Arabidopsis thaliana At1g77120 844047 ADH1 (ALCOHOL DEHYDROGENASE 1) Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. - - - C.G. S.X.
0.32 6e-10 65 Glycine max GmaAffx.28667.1.S1_at BQ473605 - - 3e-13 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.17 1e-24 113 Hordeum vulgare Contig278_at Contig278 - - 9e-41 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.19 4e-12 73 Oryza sativa Os11g0210300 AK073964.1 - Alcohol dehydrogenase 1 2e-30 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.18 2e-9 63 Triticum aestivum Ta.22986.1.S1_x_at BJ307901 - - 2e-22 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.30 3e-48 190 Vitis vinifera 1614086_at AF194173.1 alcohol dehydrogenase 1 - 3e-34 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.14 2e-22 105 Zea mays Zm.1540.1.S1_a_at L23548.1 alcohol dehydrogenase1 - 1e-18 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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