Gene omics information

Query gene ID	Ptp.2072.2.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	71.9	Ptp.2072.2.S1_s_at	CA931719	hypothetical protein	-	6e-83	At3g46060	ATRAB8A	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.135416.1.S1_s_at	CN517682	hypothetical protein	-	6e-2	At5g50650	WD-40 repeat family protein / St12p protein, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.4529.1.S1_at	CK091600	hypothetical protein	-	4e-138	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.2152.2.S1_a_at	CA826185	hypothetical protein	-	2e-5	At3g13410	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.113579.1.S1_s_at	CA930280	hypothetical protein	-	4e-31	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.1287.2.S1_s_at	CX178052	hypothetical protein	-	2e-73	At5g45130	RHA1 (RAB HOMOLOG 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	93.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	1047	Ptp.2072.1.S1_at	CV227202	hypothetical protein	-	2e-78	At3g46060	ATRAB8A	C.G.	S.X.	Please selecteFP Browser (expression)
0.65	0	981	PtpAffx.207693.1.S1_at	pmrna15267	hypothetical protein	-	4e-79	At3g46060	ATRAB8A	C.G.	S.X.	Please selecteFP Browser (expression)
0.64	0	965	PtpAffx.12284.1.A1_s_at	CV236490	hypothetical protein	-	6e-81	At3g46060	ATRAB8A	C.G.	S.X.	Please selecteFP Browser (expression)
0.55	3e-141	502	PtpAffx.14585.3.S1_at	BU893135	hypothetical protein	-	2e-133	At3g46060	ATRAB8A	C.G.	S.X.	Please selecteFP Browser (expression)
0.43	7e-59	228	Ptp.4604.1.S1_s_at	AI162560	hypothetical protein	-	3e-63	At3g46060	ATRAB8A	C.G.	S.X.	Please selecteFP Browser (expression)
0.28	2e-53	210	PtpAffx.14585.2.S1_a_at	DN496417	hypothetical protein	-	2e-40	At3g53610	ATRAB8	C.G.	S.X.	Please selecteFP Browser (expression)
0.06	8e-3	42	Ptp.1437.1.S1_s_at	CV268557	hypothetical protein	-	2e-65	At3g11730	ATFP8	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-2	40	PtpAffx.99107.3.A1_s_at	CV240653	hypothetical protein	-	6e-64	At4g19640	ARA7	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-2	40	PtpAffx.200452.1.S1_at	pmrna910	hypothetical protein	-	6e+0	At4g32175	RNA binding	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	6e-83	307	Arabidopsis thaliana	At3g46060	823749	ATRAB8A	small GTP-binding protein (ara-3)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.63	9e-120	430	Glycine max	GmaAffx.91170.1.S1_x_at	CF806895	-	-	5e-58	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.42	3e-52	204	Hordeum vulgare	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.47	8e-47	188	Oryza sativa	Os.12233.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	3e-45	182	Triticum aestivum	Ta.6968.1.S1_at	CK196001	-	-	1e-45	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.56	4e-143	506	Vitis vinifera	1619471_at	BQ794353	hypothetical protein LOC100243217	-	1e-112	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.38	3e-58	224	Zea mays	Zm.6039.1.A1_at	BG837895	-	-	9e-65	At5g03520	ATRAB8C	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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