Gene omics information

Query gene ID	Ptp.2072.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	74.6	Ptp.2072.1.S1_at	CV227202	hypothetical protein	-	2e-78	At3g46060	ATRAB8A	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	PtpAffx.149603.1.A1_at	CX177316	hypothetical protein	-	1e+0	At3g12620	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.44512.1.S1_a_at	CV261744	hypothetical protein	-	7e-26	At5g16880	VHS domain-containing protein / GAT domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	Ptp.1346.1.A1_at	CV244399	hypothetical protein	-	2e-60	At2g38700	MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.18399.1.A1_at	CV249663	-	-	1e+0	At2g07440	two-component responsive regulator-related / response regulator protein-related	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.7379.2.A1_a_at	CV265090	hypothetical protein	-	1e-32	At1g22280	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.134721.1.S1_at	CV256564	hypothetical protein	-	3e-71	At5g24520	TTG1 (TRANSPARENT TESTA GLABRA 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	94.7	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	0	1211	PtpAffx.12284.1.A1_s_at	CV236490	hypothetical protein	-	6e-81	At3g46060	ATRAB8A	C.G.	S.X.	Please selecteFP Browser (expression)
0.71	0	1203	PtpAffx.207693.1.S1_at	pmrna15267	hypothetical protein	-	4e-79	At3g46060	ATRAB8A	C.G.	S.X.	Please selecteFP Browser (expression)
0.68	0	1047	Ptp.2072.2.S1_s_at	CA931719	hypothetical protein	-	6e-83	At3g46060	ATRAB8A	C.G.	S.X.	Please selecteFP Browser (expression)
0.41	7e-131	468	PtpAffx.14585.3.S1_at	BU893135	hypothetical protein	-	2e-133	At3g46060	ATRAB8A	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	6e-54	212	Ptp.4604.1.S1_s_at	AI162560	hypothetical protein	-	3e-63	At3g46060	ATRAB8A	C.G.	S.X.	Please selecteFP Browser (expression)
0.26	4e-52	206	PtpAffx.14585.2.S1_a_at	DN496417	hypothetical protein	-	2e-40	At3g53610	ATRAB8	C.G.	S.X.	Please selecteFP Browser (expression)
0.15	9e-4	46	PtpAffx.132197.1.A1_at	DN486639	-	-	2e+0	At5g03660	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.95018.1.A1_s_at	CV263305	hypothetical protein	-	1e-14	At1g18200	AtRABA6b (Arabidopsis Rab GTPase homolog A6b)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.206943.1.S1_at	pmrna13772	hypothetical protein	-	3e+0	At5g07640	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	2e-78	293	Arabidopsis thaliana	At3g46060	823749	ATRAB8A	small GTP-binding protein (ara-3)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.46	4e-129	462	Glycine max	Gma.14354.1.S1_x_at	AW755388	-	-	3e-67	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.32	3e-47	188	Hordeum vulgare	Contig3337_s_at	Contig3337	-	-	5e-50	At5g59840	Ras-related GTP-binding family protein	C.G.	S.X.	Please select
0.37	6e-64	246	Oryza sativa	Os03g0819900	AY576526.1	-	Ethylene-responsive small GTP-binding protein	4e-82	At3g09900	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	7e-47	188	Triticum aestivum	Ta.23107.1.S1_a_at	CK156982	-	-	1e-51	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.49	4e-135	480	Vitis vinifera	1619471_at	BQ794353	hypothetical protein LOC100243217	-	1e-112	At3g46060	ATRAB8A	C.G.	S.X.	Please select
0.32	3e-56	218	Zea mays	Zm.6039.1.A1_at	BG837895	-	-	9e-65	At5g03520	ATRAB8C	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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