Gene omics information

Query gene ID	Ptp.2022.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	Ptp.2022.1.S1_s_at	CV258781	hypothetical protein	-	9e-6	At5g14240	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.25457.3.S1_a_at	CN519923	hypothetical protein	-	8e-21	At4g17486	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.8841.1.A1_at	CV261150	-	-	7e-66	At3g55140	pectate lyase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.220030.1.S1_at	pmrna36285	hypothetical protein	-	9e-3	At5g46560	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.25334.1.S1_a_at	CV258568	hypothetical protein	-	3e-15	At2g22475	GEM (GL2-EXPRESSION MODULATOR)	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.62025.1.S1_at	CV257977	-	-	2e-43	At1g47640	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.59972.2.S1_a_at	CX169696	hypothetical protein	-	2e-9	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.0	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	0	1554	PtpAffx.5714.2.S1_a_at	CV227663	hypothetical protein	-	2e-4	At5g14240	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.102994.1.S1_at	CV266619	hypothetical protein	-	9e-24	At1g07510	ftsh10 (FtsH protease 10)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	PtpAffx.52208.2.A1_a_at	CV272283	hypothetical protein	-	1e-3	At1g72550	tRNA synthetase beta subunit family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e-1	36	PtpAffx.216782.1.S1_at	pmrna31779	hypothetical protein	-	2e-19	At5g06900	CYP93D1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e-1	36	Ptp.1653.1.A1_at	CV230886	hypothetical protein	-	3e-8	At1g26110	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.99906.1.A1_at	DN484705	hypothetical protein	-	6e+0	At5g04600	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.89123.1.A1_at	CV237664	hypothetical protein	-	3e+0	At1g44770	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.8652.1.S1_at	CV234413	-	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.8394.1.S1_at	DN492041	hypothetical protein	-	2e-4	At1g77700	pathogenesis-related thaumatin family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	9e-6	52	Arabidopsis thaliana	At5g14240	831274	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	9e-13	75	Glycine max	GmaAffx.1301.53.S1_at	BG507320	-	-	6e-6	At5g14240	-	C.G.	S.X.	Please select
0.05	3e-4	46	Hordeum vulgare	Contig8441_at	Contig8441	-	-	1e-1	At4g30097	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	OsAffx.10975.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	2e-3	44	Triticum aestivum	Ta.17401.1.S1_at	CA620503	-	-	4e+0	At1g26840	ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6)	C.G.	S.X.	Please select
0.25	6e-26	117	Vitis vinifera	1606962_at	CF405430	hypothetical protein LOC100244131	-	4e-13	At5g14240	-	C.G.	S.X.	Please select
0.15	1e-3	44	Zea mays	Zm.10774.1.A1_at	CD972574	hypothetical protein LOC100193506	-	6e-1	At5g14240	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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