CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.1927.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 96.0 Ptp.1927.1.A1_at CK093004 - - 4e+0 At3g61190 BAP1 (BON ASSOCIATION PROTEIN 1) S.X. H.G.
0.60 86.0 PtpAffx.18211.1.A1_at CV257248 hypothetical protein - 9e-2 At4g11060 MTSSB (mitochondrially targeted single-stranded DNA binding protein) S.X. H.G.
0.60 86.0 PtpAffx.220781.1.S1_at pmrna37212 cytochrome P450 - 2e+0 At2g19850 - S.X. H.G.
0.50 78.6 Ptp.3407.1.S1_at CK114637 - - 3e+0 At2g21120 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.101690.1.A1_at CV255238 - - 9e-1 At5g41401 unknown protein S.X. H.G.
0.31 53.7 PtpAffx.29085.1.A1_s_at DN489411 - - 4e+0 At1g75700 HVA22G (HVA22-LIKE PROTEIN G) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
41.9 100.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.4 97.0 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.3 96.9 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0 92.9 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.5 83.5 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 38 PtpAffx.207361.1.S1_at pmrna14602 hypothetical protein - 2e-19 At1g75220 integral membrane protein, putative C.G. S.X.
0.05 6e+0 30 PtpAffx.9534.1.S1_at DN499663 hypothetical protein - 2e-1 At5g22930 unknown protein C.G. S.X.
0.03 6e+0 30 PtpAffx.5584.3.S1_a_at CV231834 hypothetical protein - 4e-11 At2g25910 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein C.G. S.X.
0.02 6e+0 30 PtpAffx.4980.1.S1_a_at BU886716 hypothetical protein - 1e-14 At3g22970 unknown protein C.G. S.X.
0.04 6e+0 30 PtpAffx.31069.1.A1_at CV249790 - - 4e+0 At1g34630 unknown protein C.G. S.X.
0.04 6e+0 30 PtpAffx.225511.1.S1_at pmrna44912 hypothetical protein - 1e+0 At5g13810 glutaredoxin family protein C.G. S.X.
0.02 6e+0 30 PtpAffx.213951.1.S1_at pmrna27194 hypothetical protein - 2e-7 At5g15300 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.07 6e+0 30 PtpAffx.211782.1.S1_at pmrna23115 hypothetical protein - 1e-1 At2g33590 cinnamoyl-CoA reductase family C.G. S.X.
0.01 6e+0 30 PtpAffx.208804.1.S1_at pmrna17457 sucrose proton symporter - 8e-66 At2g02860 SUT2 (SUCROSE TRANSPORTER 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 30 Arabidopsis thaliana At3g61190 825291 BAP1 (BON ASSOCIATION PROTEIN 1) Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis. - - - C.G. S.X.
0.06 2e+0 32 Glycine max GmaAffx.68032.1.S1_at BG359556 - - 7e-1 At2g43930 protein kinase family protein C.G. S.X.
0.07 2e+0 30 Hordeum vulgare Contig19893_at Contig19893 - - 2e+0 At1g27330 - C.G. S.X.
0.04 2e+0 32 Oryza sativa Os09g0530900 AK105162.1 - Oxydoreductase-like protein 1e+0 At1g55780 metal ion binding C.G. S.X.
0.08 1e+0 32 Triticum aestivum Ta.12970.2.S1_x_at CA629246 - - 5e-4 At1g12830 unknown protein C.G. S.X.
0.06 3e-1 32 Vitis vinifera 1606751_at CF371810 hypothetical protein LOC100247040 - 1e+0 At1g43040 auxin-responsive protein, putative C.G. S.X.
0.03 5e-1 32 Zea mays Zm.3232.1.A1_at AW171810 - - 1e-7 At1g18160 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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