Gene omics information

Query gene ID	Ptp.1919.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	Ptp.1919.1.A1_at	CK092679	-	-	4e-2	At5g40180	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.3817.1.S1_at	BU887056	hypothetical protein	-	1e+0	At3g11620	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.85796.1.S1_at	CK097356	-	-	5e+0	At5g22791	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.3991.1.S1_at	DN488960	-	-	7e-81	At5g19050	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.6678.1.S1_at	CV230067	hypothetical protein	-	2e+0	At1g34910	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.5012.1.S1_at	BU836751	-	-	3e-14	At4g36660	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.8	99.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
9.6	98.9	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	PtpAffx.6409.1.S1_at	CK090501	hypothetical protein	-	7e-28	At4g33650	DRP3A (DYNAMIN-RELATED PROTEIN 3A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.61236.1.A1_at	DN487949	-	-	4e+0	At4g12470	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e+0	34	PtpAffx.101048.1.A1_at	CV281632	-	-	7e-2	At1g11700	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e+0	32	PtpAffx.80352.1.S1_at	BU883445	-	-	9e-1	At2g46910	plastid-lipid associated protein PAP / fibrillin family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e+0	32	PtpAffx.5801.1.S1_x_at	CV261581	hypothetical protein	-	2e-30	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e+0	32	PtpAffx.5801.1.S1_s_at	CV261581	hypothetical protein	-	2e-30	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e+0	32	PtpAffx.5801.1.S1_at	CV261581	hypothetical protein	-	2e-30	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e+0	32	PtpAffx.5801.2.S1_a_at	CF230406	hypothetical protein	-	4e-22	At2g42680	MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	4e+0	32	PtpAffx.52220.1.S1_at	CK104024	-	-	1e+0	At2g01800	COP1-interacting protein-related	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-2	38	Arabidopsis thaliana	At5g40180	834016	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.10114.1.A1_at	BQ081153	-	-	3e+0	At4g01590	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Hordeum vulgare	HX03A23u_at	HX03A23u	-	-	1e+0	At1g34010	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	Oryza sativa	OsAffx.4262.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e+0	32	Triticum aestivum	TaAffx.52324.1.S1_at	CA709316	-	-	1e+0	At2g21220	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.04	8e-1	32	Vitis vinifera	1612818_at	CF414592	hypothetical protein LOC100265822	-	6e-33	At1g51060	HTA10	C.G.	S.X.	Please select
0.03	5e+0	30	Zea mays	Zm.304.1.A1_at	U64437.1	hypothetical protein LOC542763	-	4e-1	At1g63220	C2 domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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