CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.1913.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 Ptp.1913.1.A1_at CV263831 hypothetical protein - 5e-1 At4g02450 glycine-rich protein S.X. H.G.
0.50 78.6 PtpAffx.202881.1.S1_s_at pmrna5689 hypothetical protein - 1e-21 At1g72470 ATEXO70D1 (exocyst subunit EXO70 family protein D1) S.X. H.G.
0.46 73.7 Ptp.1382.1.A1_at CV258748 acyl:coa ligase - 5e-19 At1g20510 OPCL1 (OPC-8:0 COA LIGASE1) S.X. H.G.
0.44 71.9 Ptp.3030.1.S1_s_at DN484799 hypothetical protein - 6e-15 At1g79440 ALDH5F1 S.X. H.G.
0.30 52.0 PtpAffx.27171.1.A1_at CV229989 hypothetical protein - 5e-5 At2g31510 IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) S.X. H.G.
0.23 40.5 PtpAffx.42410.1.S1_s_at BP922740 hypothetical protein - 1e-20 At1g64140 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.3 95.8 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.6 94.5 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3 93.7 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.3 93.7 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9 92.5 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8 92.1 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.86 0 1013 PtpAffx.6815.1.A1_at CV273974 hypothetical protein - 2e+0 At5g17560 BolA-like family protein C.G. S.X.
0.03 6e-1 36 PtpAffx.209788.1.S1_at pmrna19307 hypothetical protein - 2e-11 At1g29850 double-stranded DNA-binding family protein C.G. S.X.
0.03 6e-1 36 PtpAffx.200989.1.S1_at pmrna1949 hypothetical protein - 8e-1 At5g26840 unknown protein C.G. S.X.
0.02 3e+0 34 PtpAffx.9433.1.A1_at DN493515 hypothetical protein - 3e-1 At4g31330 unknown protein C.G. S.X.
0.02 3e+0 34 PtpAffx.54540.1.S1_at DN488317 - - 7e-3 At1g33870 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative C.G. S.X.
0.02 3e+0 34 PtpAffx.23169.1.A1_at CV240298 hypothetical protein - 5e-23 At3g21360 electron carrier/ oxidoreductase C.G. S.X.
0.02 3e+0 34 PtpAffx.222754.1.S1_at pmrna40386 hypothetical protein - 2e-6 At5g27400 unknown protein C.G. S.X.
0.01 3e+0 34 PtpAffx.215069.1.S1_at pmrna29030 hypothetical protein - 2e-1 At1g68070 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 3e+0 34 PtpAffx.206293.1.S1_s_at pmrna12477 hypothetical protein - 4e-2 At2g37960 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Arabidopsis thaliana At4g02450 828006 glycine-rich protein F:molecular_function unknown;P:unknown;C:plasma membrane;BMOPFVA - - - C.G. S.X.
0.03 3e+0 34 Glycine max GmaAffx.51736.1.A1_at BU550562 - - 1e+0 At3g01800 ribosome recycling factor family protein / ribosome releasing factor family protein C.G. S.X.
0.03 4e+0 32 Hordeum vulgare Contig22334_at Contig22334 - - 2e+0 At2g40790 ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) C.G. S.X.
0.02 6e-2 40 Oryza sativa Os03g0374400 AK069719.1 - Conserved hypothetical protein 1e-6 At2g02370 - C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.114109.1.S1_at CA598519 - - 3e+0 At4g35490 MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) C.G. S.X.
0.07 1e-11 69 Vitis vinifera 1620116_at CF210995 hypothetical protein LOC100262620 - 3e-4 At5g47140 zinc finger (GATA type) family protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.5751.1.A1_at AI649424 peroxidase - 2e+1 At5g50760 auxin-responsive family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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