Gene omics information

Query gene ID	Ptp.1815.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	97.5	Ptp.1815.1.S1_at	CV263204	hypothetical protein	-	7e-139	At5g20000	26S proteasome AAA-ATPase subunit, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.79	95.3	PtpAffx.53713.1.S1_at	CK107139	-	-	3e-1	At5g40550	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.78	95.1	Ptp.674.1.A1_at	CK087369	hypothetical protein	-	2e-11	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	Ptp.100.2.S1_at	CK088962	hypothetical protein	-	1e+0	At3g56770	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.76	94.3	Ptp.3383.1.S1_at	DN488137	hypothetical protein	-	2e-25	At2g21270	ubiquitin fusion degradation UFD1 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.74	93.8	Ptp.7259.1.A1_at	DN487946	hypothetical protein	-	1e-13	At1g07710	ankyrin repeat family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	Ptp.2543.1.S1_at	CK092566	hypothetical protein	-	7e+0	At3g59390	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	Ptp.100.1.S1_a_at	BU834161	-	-	4e-5	At2g41790	peptidase M16 family protein / insulinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.72	92.7	PtpAffx.106310.1.A1_s_at	DN487587	hypothetical protein	-	1e+0	At5g03210	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	Ptp.3643.1.S1_at	BU836758	hypothetical protein	-	7e-3	At1g53620	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.1	98.7	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.4	97.0	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.7	96.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.9	95.1	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.80	0	993	PtpAffx.3734.1.A1_at	CV270874	-	-	2e-132	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.80	0	993	PtpAffx.3734.1.A1_s_at	CV270874	-	-	2e-132	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.44	0	702	Ptp.6509.1.S1_at	CF236682	hypothetical protein	-	1e-171	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.39	2e-143	510	PtpAffx.25966.1.S1_s_at	AJ767715	hypothetical protein	-	3e-126	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	2e-96	353	PtpAffx.3734.2.A1_a_at	CV268386	hypothetical protein	-	1e-41	At5g20000	26S proteasome AAA-ATPase subunit, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.40	2e-96	353	PtpAffx.3734.2.A1_at	CV268386	hypothetical protein	-	1e-41	At5g20000	26S proteasome AAA-ATPase subunit, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.44	1e-85	317	PtpAffx.206409.1.S1_at	pmrna12733	hypothetical protein	-	6e-39	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.21	1e-61	238	PtpAffx.3734.3.A1_at	CV231544	-	-	5e-21	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-5	50	PtpAffx.215506.1.S1_at	pmrna29742	hypothetical protein	-	0	At4g04910	NSF (N-ethylmaleimide sensitive factor)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	7e-139	494	Arabidopsis thaliana	At5g20000	832122	26S proteasome AAA-ATPase subunit, putative	F:hydrolase activity, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:protein catabolic process, ubiquitin-dependent protein catabolic process;C:proteasome regulatory particle, base subcomplex, nucleus;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	4e-175	615	Glycine max	Gma.11232.1.S1_s_at	BI943460	-	-	0	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please select
0.39	2e-45	182	Hordeum vulgare	Contig3528_at	Contig3528	-	-	5e-119	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please select
0.42	2e-66	254	Oryza sativa	Os06g0600100	AK065619.1	-	TAT-binding protein homolog	6e-131	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	3e-52	206	Triticum aestivum	Ta.27536.1.S1_at	BT009143.1	-	-	1e-147	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please select
0.49	3e-98	357	Vitis vinifera	1622689_at	CF204846.1	-	-	6e-111	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please select
0.44	9e-112	402	Zea mays	Zm.5322.1.A1_a_at	AY103724.1	hypothetical protein LOC100273032 /// hypothetical protein LOC100274445	-	9e-152	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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