Gene omics information

Query gene ID	Ptp.1746.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	Ptp.1746.1.A1_at	CV236183	hypothetical protein	-	2e+0	At5g17790	VAR3 (VARIEGATED 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.201326.1.S1_s_at	pmrna2629	hypothetical protein	-	4e-27	At3g15030	TCP4 (TCP family transcription factor 4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.221342.1.S1_at	pmrna38177	hypothetical protein	-	1e-20	At4g10000	electron carrier/ protein disulfide oxidoreductase	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.209175.1.S1_at	pmrna18163	integral membrane single C2 domain protein	-	1e-83	At1g50260	NTMC2T5.1 (N-TERMINAL-TRANSMEMBRANE-C2 DOMAIN TYPE 5.1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.202999.1.S1_at	pmrna5939	hypothetical protein	-	2e-38	At1g53800	endonuclease	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.113964.2.A1_a_at	CV277067	hypothetical protein	-	3e-5	At1g30210	TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	97.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.9	96.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6	96.2	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6	96.2	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9	95.1	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.8	94.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	5e-60	232	PtpAffx.158573.1.S1_at	CX658654	hypothetical protein	-	1e-3	At5g17790	VAR3 (VARIEGATED 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e-1	38	PtpAffx.214606.1.S1_at	pmrna28387	hypothetical protein	-	6e-12	At3g28430	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.203906.1.S1_at	pmrna7716	hypothetical protein	-	1e-5	At2g44450	BGLU15 (BETA GLUCOSIDASE 15)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.56104.1.A1_at	CV278211	hypothetical protein	-	2e-5	At2g37060	NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.225182.1.S1_s_at	pmrna44336	tir-nbs-lrr resistance protein /// tir-nbs-lrr resistance protein /// hypothetical protein /// tir-nbs-lrr resistance protein	-	1e-2	At4g12010	disease resistance protein (TIR-NBS-LRR class), putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.224956.1.S1_at	pmrna43898	tir-nbs-lrr resistance protein	-	4e-2	At4g16940	ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.212998.1.S1_s_at	pmrna25415	hypothetical protein	-	3e-15	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.212986.1.S1_at	pmrna25399	hypothetical protein	-	3e-2	At5g64240	AtMC3 (metacaspase 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.140086.1.A1_at	CV273245	hypothetical protein	-	3e-1	At1g11580	PMEPCRA (METHYLESTERASE PCR A)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g17790	831647	VAR3 (VARIEGATED 3)	Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	1e-33	145	Glycine max	GmaAffx.69683.1.S1_at	CA799656	-	-	7e-9	At5g17790	VAR3 (VARIEGATED 3)	C.G.	S.X.	Please select
0.03	1e+1	30	Hordeum vulgare	HO15C14S_s_at	HO15C14S	-	-	2e+0	At5g55210	unknown protein	C.G.	S.X.	Please select
0.04	6e-11	69	Oryza sativa	Os01g0815700	AK073519.1	-	Zn-finger, Ran-binding domain containing protein	5e-10	At5g17790	VAR3 (VARIEGATED 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Triticum aestivum	Ta.18559.1.S1_at	CA638720	-	-	3e+0	At5g52980	unknown protein	C.G.	S.X.	Please select
0.26	1e-51	202	Vitis vinifera	1617399_at	CB342525	hypothetical protein LOC100262132	-	5e-21	At5g17790	VAR3 (VARIEGATED 3)	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.4392.2.A1_a_at	AW787551	Ran-related GTP binding protein	-	3e-63	At5g20020	RAN2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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