Gene omics information

Query gene ID	Ptp.1743.1.A1_a_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	94.1	Ptp.1743.1.A1_a_at	CV271562	hypothetical protein	-	3e-45	At4g26300	emb1027 (embryo defective 1027)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.5999.1.S1_s_at	BU894039	hypothetical protein	-	3e-14	At5g42720	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.6732.1.S1_at	CK111922	histone 2	-	2e-27	At3g54560	HTA11	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.2543.1.S1_at	DN490912	hypothetical protein	-	8e-10	At1g04190	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.19408.1.S1_a_at	CV255062	hypothetical protein	-	3e-70	At3g26340	20S proteasome beta subunit E, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.8141.1.S1_at	CV250890	hypothetical protein	-	2e-83	At5g08290	YLS8	S.X.	H.G.	Please selecteFP Browser (expression)
0.16	26.9	Ptp.5276.1.S1_s_at	CV268936	hypothetical protein	-	1e-25	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.0	92.9	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	4e-45	182	PtpAffx.5999.1.S1_s_at	BU894039	hypothetical protein	-	3e-14	At5g42720	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-2	40	Ptp.6971.1.S1_at	BU865660	hypothetical protein	-	9e-2	At3g14480	glycine/proline-rich protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.2294.1.S1_at	CN524740	hypothetical protein	-	4e-48	At1g66530	arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e-1	36	PtpAffx.204681.1.S1_at	pmrna9216	hypothetical protein	-	4e-106	At4g34100	protein binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	6e-1	36	PtpAffx.105987.1.S1_at	DN493124	-	-	6e-1	At1g04960	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e+0	34	PtpAffx.79606.1.S1_at	CK091605	NAC domain protein, IPR003441	-	2e-19	At5g24590	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	3e+0	34	PtpAffx.224272.1.S1_s_at	pmrna42677	cc-nbs-lrr resistance protein /// cc-nbs-lrr resistance protein	-	3e-2	At3g52840	BGAL2 (beta-galactosidase 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e+0	34	PtpAffx.224023.1.S1_s_at	pmrna42255	hypothetical protein	-	7e-1	At3g59090	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e+0	34	PtpAffx.219740.1.S1_s_at	pmrna35767	AP2 domain-containing transcription factor	-	2e-1	At1g18790	RWP-RK domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	3e-45	182	Arabidopsis thaliana	At4g26300	828736	emb1027 (embryo defective 1027)	F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	9e-62	238	Glycine max	Gma.10893.1.S1_at	BE659457	arginyl-tRNA synthetase	-	7e-20	At4g26300	emb1027 (embryo defective 1027)	C.G.	S.X.	Please select
0.15	4e-6	52	Hordeum vulgare	Contig9377_at	Contig9377	-	-	4e-27	At4g26300	emb1027 (embryo defective 1027)	C.G.	S.X.	Please select
0.14	2e-8	61	Oryza sativa	Os05g0163000	AK066161.1	-	Arginyl-tRNA synthetase, class Ic family protein	2e-20	At4g26300	emb1027 (embryo defective 1027)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-4	48	Triticum aestivum	Ta.2176.1.S1_at	CK206562	-	-	1e-25	At4g26300	emb1027 (embryo defective 1027)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1613989_at	CF414043	-	-	7e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.15	3e-22	105	Zea mays	Zm.7543.1.A1_at	CD997722	hypothetical protein LOC100192002	-	4e-6	At1g66530	arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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