Gene omics information

Query gene ID	Ptp.1730.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	Ptp.1730.1.A1_at	CK093317	-	-	5e+0	At5g62330	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.788.1.S1_at	CK089255	hypothetical protein	-	2e-38	At4g38240	CGL1 (COMPLEX GLYCAN LESS 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.31469.1.A1_at	DN493005	hypothetical protein	-	2e-40	At1g66460	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.1919.1.A1_at	CK092679	-	-	4e-2	At5g40180	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.78728.1.S1_at	DN495875	-	-	3e+0	Atmg01120	-	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.9	98.0	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
6.5	97.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.3	95.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	3e-51	200	PtpAffx.134451.1.A1_at	CV235094	hypothetical protein	-	4e+0	At3g03760	LBD20 (LOB DOMAIN-CONTAINING PROTEIN 20)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	34	PtpAffx.217078.1.S1_s_at	pmrna32215	hypothetical protein	-	1e-21	At3g16560	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	4e-1	34	PtpAffx.210712.1.S1_at	pmrna21012	hypothetical protein	-	9e-1	At5g07360	amidase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	32	PtpAffx.30074.1.S1_at	CV244633	hypothetical protein	-	1e-22	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	32	PtpAffx.209248.1.S1_at	pmrna18284	hypothetical protein	-	1e-22	At3g56100	MRLK (MERISTEMATIC RECEPTOR-LIKE KINASE)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	32	PtpAffx.208542.1.S1_at	pmrna16952	hypothetical protein	-	3e-25	At3g16560	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	32	PtpAffx.207517.1.S1_at	pmrna14928	-	-	1e-30	At5g04885	glycosyl hydrolase family 3 protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	7e+0	30	PtpAffx.84176.1.A1_s_at	CK096358	hypothetical protein	-	1e+0	At3g55740	PROT2 (PROLINE TRANSPORTER 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	7e+0	30	PtpAffx.84176.1.A1_at	CK096358	hypothetical protein	-	1e+0	At3g55740	PROT2 (PROLINE TRANSPORTER 2)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	30	Arabidopsis thaliana	At5g62330	836354	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	32	Glycine max	GmaAffx.69307.1.S1_at	BQ473855	-	-	2e-1	At4g02465	unknown protein	C.G.	S.X.	Please select
0.05	9e+0	28	Hordeum vulgare	HVSMEi0012J12r2_s_at	HVSMEi0012J12r2	-	-	3e-3	At5g56600	PRF3 (PROFILIN 3)	C.G.	S.X.	Please select
0.06	1e+1	30	Oryza sativa	OsAffx.8794.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	30	Triticum aestivum	Ta.7762.1.S1_x_at	BQ102545	-	-	1e+1	At5g14360	ubiquitin family protein	C.G.	S.X.	Please select
0.04	2e+0	30	Vitis vinifera	1620189_at	CF512495	hypothetical protein LOC100265424	-	6e-30	At3g08840	D-alanine--D-alanine ligase family	C.G.	S.X.	Please select
0.05	8e+0	28	Zea mays	ZmAffx.455.1.A1_at	AI677194	hypothetical protein LOC100194007	-	3e+0	At1g44085	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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