CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.1602.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 94.9 Ptp.1602.1.S1_at AY307372.1 hypothetical protein - 8e-102 At1g20930 CDKB2 S.X. H.G.
0.80 96.0 PtpAffx.206227.1.S1_at pmrna12360 hypothetical protein - 6e-68 At2g37420 kinesin motor protein-related S.X. H.G.
0.80 96.0 PtpAffx.212217.1.S1_at pmrna23950 hypothetical protein - 8e-47 At1g54385 binding S.X. H.G.
0.67 91.1 PtpAffx.44525.1.A1_at CV228923 hypothetical protein - 1e+0 At2g41530 SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S.X. H.G.
0.60 86.0 PtpAffx.206215.1.S1_at pmrna12339 hypothetical protein - 6e-19 At2g45490 AtAUR3 (ATAURORA3) S.X. H.G.
0.60 86.0 PtpAffx.204430.1.S1_at pmrna8705 hypothetical protein - 2e-160 At3g44050 kinesin motor protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.7 99.7 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
16.7 99.6 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
14.4 99.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.6 84.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-7 56 PtpAffx.20351.1.S1_at CV254894 hypothetical protein - 2e-32 At3g54180 CDKB1 C.G. S.X.
0.03 6e-5 50 Ptp.1755.1.S1_at AF194820.1 hypothetical protein - 1e-97 At3g48750 CDC2 (CELL DIVISION CONTROL 2) C.G. S.X.
0.04 9e-4 46 PtpAffx.132345.1.A1_s_at CV253345 hypothetical protein - 2e-30 At3g48750 CDC2 (CELL DIVISION CONTROL 2) C.G. S.X.
0.02 1e-2 42 PtpAffx.206011.1.S1_s_at pmrna11915 hypothetical protein - 3e-114 At5g10270 CDKC C.G. S.X.
0.01 2e-1 38 PtpAffx.201798.1.S1_at pmrna3581 hypothetical protein - 7e-1 At4g23030 MATE efflux protein-related C.G. S.X.
0.01 3e+0 34 PtpAffx.209998.1.S1_at pmrna19722 cyclic nucleotide-gated channel - 1e-2 At5g26751 ATSK11 C.G. S.X.
0.01 3e+0 34 PtpAffx.201485.1.S1_at pmrna2919 hypothetical protein - 7e-25 At3g13300 VCS (VARICOSE) C.G. S.X.
0.03 3e+0 34 PtpAffx.17880.1.S1_at CV269811 hypothetical protein - 7e-55 At3g53930 protein kinase family protein C.G. S.X.
0.01 3e+0 34 Ptp.214.1.A1_s_at BU822651 hypothetical protein - 1e-5 At3g13300 VCS (VARICOSE) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 8e-102 371 Arabidopsis thaliana At1g20930 838687 CDKB2 Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle. - - - C.G. S.X.
0.54 1e-73 278 Glycine max Gma.2284.1.S1_at CD418070 cyclin-dependent kinases CDKB - 7e-87 At1g76540 CDKB2 C.G. S.X.
0.13 5e-12 71 Hordeum vulgare Contig9682_at Contig9682 - - 3e-12 At1g76540 CDKB2 C.G. S.X.
0.15 1e-3 46 Oryza sativa Os08g0512600 D64036.1 - Protein cdc2 kinase 2e-7 At1g76540 CDKB2 C.G. S.X.
0.12 3e-12 73 Triticum aestivum Ta.6911.1.S1_at CA702838 - - 1e-11 At1g76540 CDKB2 C.G. S.X.
0.45 7e-115 412 Vitis vinifera 1616453_at CF510913 hypothetical protein LOC100254782 - 2e-58 At1g76540 CDKB2 C.G. S.X.
0.08 2e-2 40 Zea mays Zm.1334.1.S1_at BF729363 - - 7e-4 At1g76540 CDKB2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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