Gene omics information

Query gene ID	Ptp.1557.2.S1_s_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	Ptp.1557.2.S1_s_at	BI120353	-	-	1e-3	At4g17730	SYP23 (SYNTAXIN OF PLANTS 23)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.2171.1.S1_a_at	CV227774	hypothetical protein	-	3e-32	At3g12560	TRFL9 (TRF-LIKE 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	Ptp.51.1.A1_at	CV257322	hypothetical protein	-	3e-9	At5g12310	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.63326.1.A1_at	CV244522	hypothetical protein	-	5e-16	At2g35100	ARAD1 (ARABINAN DEFICIENT 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	Ptp.4875.1.A1_a_at	CV283196	hypothetical protein	-	4e-4	At4g13020	MHK	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.203319.1.S1_s_at	pmrna6599	hypothetical protein	-	4e-43	At1g64630	WNK10 (WITH NO LYSINE KINASE 10)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	97.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.4	97.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	0	672	PtpAffx.12507.1.A1_at	CV251767	-	-	2e-44	At4g17730	SYP23 (SYNTAXIN OF PLANTS 23)	C.G.	S.X.	Please selecteFP Browser (expression)
0.44	1e-93	343	Ptp.1557.1.S1_at	CK093734	hypothetical protein	-	3e-55	At4g17730	SYP23 (SYNTAXIN OF PLANTS 23)	C.G.	S.X.	Please selecteFP Browser (expression)
0.20	2e-18	93	PtpAffx.12507.2.S1_s_at	CF936851	hypothetical protein	-	7e-62	At4g17730	SYP23 (SYNTAXIN OF PLANTS 23)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-2	40	Ptp.4568.1.A1_s_at	CV257286	hypothetical protein	-	1e-56	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.208115.1.S1_at	pmrna16120	hypothetical protein	-	2e-1	At1g65810	tRNA-splicing endonuclease positive effector-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.207055.1.S1_at	pmrna13979	hypothetical protein	-	5e-83	At1g60560	SWIM zinc finger family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	2e+0	34	PtpAffx.8886.1.S1_s_at	BU817264	hypothetical protein	-	6e-10	At5g54800	GPT1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.222176.1.S1_at	pmrna39427	hypothetical protein	-	2e+0	At1g44674	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.221966.1.S1_at	pmrna39104	hypothetical protein	-	2e-13	At2g16660	nodulin family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-3	44	Arabidopsis thaliana	At4g17730	827494	SYP23 (SYNTAXIN OF PLANTS 23)	member of SYP2 Gene Family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	4e-11	69	Glycine max	Gma.185.1.S1_at	AF532627.1	syntaxin	-	1e-45	At5g46860	VAM3	C.G.	S.X.	Please select
0.05	2e-1	36	Hordeum vulgare	HV05C17u_at	HV05C17u	-	-	3e-1	At1g65820	microsomal glutathione s-transferase, putative	C.G.	S.X.	Please select
0.03	3e-3	44	Oryza sativa	Os01g0254900	AK068204.1	-	Syntaxin	1e-5	At5g46860	VAM3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Triticum aestivum	TaAffx.54382.1.S1_at	CA682356	-	-	5e-1	At5g67490	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1620081_at	CB915590	-	-	7e-1	At1g10500	ATCPISCA (chloroplast-localized IscA-like protein)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.693.1.A1_at	AI737419	hypothetical protein LOC100191981	-	8e-1	At5g24130	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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