CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.148.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.148.1.S1_at CV225595 hypothetical protein - 4e-35 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) S.X. H.G.
0.40 67.0 PtpAffx.97277.1.S1_at CV262016 hypothetical protein - 8e-38 At5g51450 RIN3 (RPM1 INTERACTING PROTEIN 3) S.X. H.G.
0.38 63.7 Ptp.6308.1.S1_at CV229172 hypothetical protein - 1e-10 At3g15340 PPI2 (proton pump interactor 2) S.X. H.G.
0.29 50.5 Ptp.2158.1.S1_at CV227156 hypothetical protein - 7e-3 At4g29350 PFN2 (PROFILIN 2) S.X. H.G.
0.20 34.6 Ptp.8055.1.S1_at CV231079 hypothetical protein - 4e-12 At2g24050 MIF4G domain-containing protein / MA3 domain-containing protein S.X. H.G.
0.17 29.1 PtpAffx.252.1.A1_at CV254804 Sec61 transport protein - 4e-17 At1g78720 protein transport protein sec61, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.4 99.0 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.0 98.0 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.9 98.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.8 98.0 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.73 0 813 Ptp.1266.1.S1_a_at CV252807 hypothetical protein - 2e-31 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) C.G. S.X.
0.52 6e-149 527 PtpAffx.18887.1.S1_at CV260915 hypothetical protein - 6e-31 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) C.G. S.X.
0.49 3e-132 472 Ptp.630.1.S1_at CV260352 hypothetical protein - 3e-39 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
0.41 4e-110 398 PtpAffx.87608.1.S1_at CK115501 hypothetical protein - 4e-8 At5g59300 UBC7 (UBIQUITIN CARRIER PROTEIN 7) C.G. S.X.
0.11 3e-18 93 Ptp.2613.1.A1_x_at CV259129 hypothetical protein - 2e-33 At4g26230 60S ribosomal protein L31 (RPL31B) C.G. S.X.
0.03 2e-1 38 PtpAffx.63036.1.A1_at CV256732 hypothetical protein - 8e-1 At3g56420 - C.G. S.X.
0.01 3e+0 34 PtpAffx.3566.1.S1_at CV255072 hypothetical protein - 3e-77 At1g09760 U2A' (U2 small nuclear ribonucleoprotein A) C.G. S.X.
0.02 3e+0 34 PtpAffx.249.570.S1_a_at CV256339 hypothetical protein - 8e-18 At2g22240 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) C.G. S.X.
0.02 3e+0 34 PtpAffx.249.570.S1_at CV256339 hypothetical protein - 8e-18 At2g22240 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 4e-35 149 Arabidopsis thaliana At3g55380 824704 UBC14 (ubiquitin-conjugating enzyme 14) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV - - - C.G. S.X.
0.37 2e-47 190 Glycine max Gma.3757.1.S1_at CD405183 - - 6e-53 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
0.20 1e-18 93 Hordeum vulgare Contig3462_at Contig3462 - - 5e-35 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
0.19 1e-15 85 Oryza sativa Os05g0460200 AK098861.1 - Ubiquitin carrier protein 4e-36 At5g59300 UBC7 (UBIQUITIN CARRIER PROTEIN 7) C.G. S.X.
0.23 6e-22 105 Triticum aestivum Ta.26942.1.S1_at CD491274 - - 8e-46 At5g59300 UBC7 (UBIQUITIN CARRIER PROTEIN 7) C.G. S.X.
0.26 8e-31 133 Vitis vinifera 1621762_at CF371697 hypothetical protein LOC100242812 - 6e-30 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) C.G. S.X.
0.20 9e-16 83 Zea mays Zm.16785.1.A1_at AF032468.1 hypothetical protein LOC100272466 - 7e-37 At5g59300 UBC7 (UBIQUITIN CARRIER PROTEIN 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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