CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.1463.3.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.1463.3.A1_s_at CV263405 hypothetical protein - 1e-4 At4g19200 proline-rich family protein S.X. H.G.
0.67 91.1 Ptp.1758.1.A1_at CV229748 hypothetical protein - 5e-50 At1g60780 HAP13 (HAPLESS 13) S.X. H.G.
0.67 91.1 PtpAffx.13438.1.S1_s_at AI167052 hypothetical protein - 2e-96 At3g28715 H+-transporting two-sector ATPase, putative S.X. H.G.
0.67 91.1 PtpAffx.13792.1.S1_at CV267483 hypothetical protein - 4e-20 At3g49390 CID10 S.X. H.G.
0.67 91.1 PtpAffx.43623.2.A1_a_at CV227115 hypothetical protein - 7e-5 At3g03610 phagocytosis and cell motility protein ELMO1-related S.X. H.G.
0.44 71.9 Ptp.3882.1.S1_at CV264407 hypothetical protein - 2e-19 At5g47120 ATBI1 (BAX INHIBITOR 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.8 97.4 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.51 2e-146 517 PtpAffx.8975.1.S1_a_at CV234496 hypothetical protein - 4e-1 At5g45350 proline-rich family protein C.G. S.X.
0.53 3e-142 504 Ptp.1463.2.S1_s_at CV269413 - - 4e-4 At4g19200 proline-rich family protein C.G. S.X.
0.26 3e-120 430 Ptp.1463.1.S1_at BU884907 - - 1e-11 At2g32080 PUR ALPHA-1 C.G. S.X.
0.52 5e-116 416 PtpAffx.8975.3.A1_at CV262521 - - 2e-2 At4g19200 proline-rich family protein C.G. S.X.
0.30 2e-90 331 Ptp.661.3.S1_a_at CV230717 hypothetical protein - 5e-16 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) C.G. S.X.
0.04 1e-2 40 PtpAffx.249.623.A1_a_at CV279333 hypothetical protein - 1e+0 At2g16040 hAT dimerisation domain-containing protein / transposase-related C.G. S.X.
0.03 1e-2 40 PtpAffx.249.43.S1_s_at CX167700 hypothetical protein - 4e-8 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.02 1e-2 40 PtpAffx.211869.1.S1_at pmrna23303 hypothetical protein - 3e-28 At1g05120 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein C.G. S.X.
0.03 4e-2 38 PtpAffx.210932.1.S1_s_at pmrna21483 hypothetical protein - 2e-3 At1g58460 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 1e-4 46 Arabidopsis thaliana At4g19200 827660 proline-rich family protein F:unknown;P:unknown;C:unknown;MBPFOVA - - - C.G. S.X.
0.08 1e-2 40 Glycine max Gma.16817.1.S1_s_at AF169205.1 glycine-rich RNA-binding protein - 2e-5 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.04 9e-1 32 Hordeum vulgare rbaal5d06_s_at rbaal5d06 - - 1e+0 At5g45113 mitochondrial transcription termination factor-related / mTERF-related C.G. S.X.
0.09 2e-1 36 Oryza sativa Os08g0238900 9636.m01394 - - 7e+0 At3g18200 nodulin MtN21 family protein C.G. S.X.
0.07 1e-1 36 Triticum aestivum Ta.1966.2.S1_x_at CA647547 - - 2e+0 At2g27340 - C.G. S.X.
0.06 1e-1 34 Vitis vinifera 1612495_at CF415125 hypothetical protein LOC100254598 - 1e-13 At5g45350 proline-rich family protein C.G. S.X.
0.07 1e-2 38 Zea mays ZmAffx.32.1.S1_at AI657422 - - 3e+0 At1g12020 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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