Gene omics information

Query gene ID Ptp.1382.1.A1_at
Gene name acyl:coa ligase
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5380.5Ptp.1382.1.A1_atCV258748acyl:coa ligase-5e-19At1g20510OPCL1 (OPC-8:0 COA LIGASE1)S.X.H.G.
0.5078.6Ptp.1913.1.A1_atCV263831hypothetical protein-5e-1At4g02450glycine-rich proteinS.X.H.G.
0.4774.6PtpAffx.42410.1.S1_s_atBP922740hypothetical protein-1e-20At1g64140-S.X.H.G.
0.4673.7PtpAffx.52716.1.A1_s_atCK096645hypothetical protein-6e-28At5g17380pyruvate decarboxylase family proteinS.X.H.G.
0.1830.8PtpAffx.27171.1.A1_atCV229989hypothetical protein-5e-5At2g31510IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)S.X.H.G.
0.1729.1PtpAffx.42410.1.S1_atBP922740hypothetical protein-1e-20At1g64140-S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.396.9GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
4.796.3GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
4.596.1GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
3.894.9GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
3.694.5GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
3.393.7GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
3.293.5GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.293.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.193.2GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.221e-26121PtpAffx.217570.1.S1_atpmrna32889hypothetical protein-3e-1At1g05330unknown proteinC.G.S.X.
0.042e-344PtpAffx.210631.1.S1_x_atpmrna208554-coumarate-coa ligase-2e-14At5g633804-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinC.G.S.X.
0.042e-344PtpAffx.210631.1.S1_s_atpmrna208554-coumarate-coa ligase-2e-14At5g633804-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinC.G.S.X.
0.042e-344PtpAffx.13512.1.S1_s_atCV2589354-coumarate-coa ligase-9e-12At5g633804-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinC.G.S.X.
0.048e-342PtpAffx.207594.1.S1_atpmrna15070acyl:coa ligase-2e-1At2g26120glycine-rich proteinC.G.S.X.
0.031e-138PtpAffx.222245.1.S1_atpmrna395324-coumarate-coa ligase-1e-9At1g204804-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinC.G.S.X.
0.061e-138PtpAffx.161822.1.A1_s_atCK0976804-coumarate-coa ligase-2e-9At1g204804-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinC.G.S.X.
0.041e-138PtpAffx.13512.2.S1_atCV257679acyl:coa ligase-7e-6At5g633804-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinC.G.S.X.
0.031e-138Ptp.3043.1.S1_atAF041049.14-Coumarate:CoA ligase-3e-13At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.145e-1995Arabidopsis thalianaAt1g20510838639OPCL1 (OPC-8:0 COA LIGASE1)F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAV---C.G.S.X.
0.104e-2099Glycine maxGma.10960.1.S1_s_atBQ453915--2e-29At1g20510OPCL1 (OPC-8:0 COA LIGASE1)C.G.S.X.
0.045e-857Hordeum vulgareContig10937_atContig10937--3e-10At1g20490AMP-dependent synthetase and ligase family proteinC.G.S.X.
0.038e-756Oryza sativaOsAffx.21790.1.S1_at---0C.G.S.X.
0.072e+034Triticum aestivumTaAffx.97935.1.S1_atBQ801609--4e-4At1g20510OPCL1 (OPC-8:0 COA LIGASE1)C.G.S.X.
0.088e-1269Vitis vinifera1607163_atCF415171hypothetical protein LOC100243654-4e+0At5g55855unknown proteinC.G.S.X.
0.121e-240Zea maysZm.18403.1.A1_atBM072852hypothetical protein LOC100274307-5e-3At5g381204-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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