CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.1266.1.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 Ptp.1266.1.S1_a_at CV252807 hypothetical protein - 2e-31 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) S.X. H.G.
0.67 91.1 Ptp.6308.1.S1_at CV229172 hypothetical protein - 1e-10 At3g15340 PPI2 (proton pump interactor 2) S.X. H.G.
0.40 67.0 Ptp.148.1.S1_at CV225595 hypothetical protein - 4e-35 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) S.X. H.G.
0.38 63.7 Ptp.8055.1.S1_at CV231079 hypothetical protein - 4e-12 At2g24050 MIF4G domain-containing protein / MA3 domain-containing protein S.X. H.G.
0.32 55.2 PtpAffx.200667.1.S1_x_at pmrna1297 hypothetical protein - 4e-78 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) S.X. H.G.
0.31 53.7 PtpAffx.36849.1.S1_at BU872031 hypothetical protein - 8e-22 At3g13060 - S.X. H.G.
0.20 34.6 Ptp.630.1.S1_at CV260352 hypothetical protein - 3e-39 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.3 98.2 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.3 98.2 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.2 98.1 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.6 97.9 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.3 96.9 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.0 88.0 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.73 0 813 Ptp.148.1.S1_at CV225595 hypothetical protein - 4e-35 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) C.G. S.X.
0.53 3e-166 585 PtpAffx.18887.1.S1_at CV260915 hypothetical protein - 6e-31 At3g55380 UBC14 (ubiquitin-conjugating enzyme 14) C.G. S.X.
0.45 7e-161 567 PtpAffx.87608.1.S1_at CK115501 hypothetical protein - 4e-8 At5g59300 UBC7 (UBIQUITIN CARRIER PROTEIN 7) C.G. S.X.
0.50 7e-152 537 Ptp.630.1.S1_at CV260352 hypothetical protein - 3e-39 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
0.11 5e-23 109 Ptp.2613.1.A1_x_at CV259129 hypothetical protein - 2e-33 At4g26230 60S ribosomal protein L31 (RPL31B) C.G. S.X.
0.03 6e-1 36 PtpAffx.39408.1.A1_at CK094369 - - 7e-1 At1g68875 unknown protein C.G. S.X.
0.02 6e-1 36 PtpAffx.249.570.S1_a_at CV256339 hypothetical protein - 8e-18 At2g22240 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) C.G. S.X.
0.02 6e-1 36 PtpAffx.249.570.S1_at CV256339 hypothetical protein - 8e-18 At2g22240 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) C.G. S.X.
0.03 6e-1 36 PtpAffx.144084.1.S1_at BU823182 - - 9e-1 At5g45820 CIPK20 (CBL-INTERACTING PROTEIN KINASE 20) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 2e-31 137 Arabidopsis thaliana At3g55380 824704 UBC14 (ubiquitin-conjugating enzyme 14) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV - - - C.G. S.X.
0.38 3e-58 226 Glycine max Gma.3757.1.S1_at CD405183 - - 6e-53 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
0.24 1e-15 83 Hordeum vulgare Contig3462_at Contig3462 - - 5e-35 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
0.20 3e-10 67 Oryza sativa Os05g0460200 AK098861.1 - Ubiquitin carrier protein 4e-36 At5g59300 UBC7 (UBIQUITIN CARRIER PROTEIN 7) C.G. S.X.
0.25 1e-20 101 Triticum aestivum Ta.26942.1.S1_at CD491274 - - 8e-46 At5g59300 UBC7 (UBIQUITIN CARRIER PROTEIN 7) C.G. S.X.
0.31 3e-42 171 Vitis vinifera 1608461_at BQ797145 hypothetical protein LOC100264959 - 6e-64 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
0.22 3e-31 135 Zea mays Zm.6484.2.S1_at BM074510 ubiquitin-conjugating enzyme E2 7 - 2e-37 At3g46460 UBC13 (ubiquitin-conjugating enzyme 13) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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