Gene omics information

Query gene ID	Ptp.1178.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	92.6	Ptp.1178.1.A1_at	CV265898	hypothetical protein	-	2e-71	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.990.1.A1_at	CK089920	CPK related protein kinase 8	-	1e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.61345.1.S1_at	CK090136	thioredoxin x	-	1e-4	At1g50320	ATHX	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.148428.1.S1_s_at	CN520642	hypothetical protein	-	3e-2	At1g52220	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.62250.1.A1_at	CV263927	hypothetical protein	-	9e-40	At3g10060	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.3866.1.S1_at	CV277036	hypothetical protein	-	3e-13	At5g46800	BOU (A BOUT DE SOUFFLE)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	96.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.8	96.4	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4	95.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.9	95.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.8	94.9	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	977	PtpAffx.10990.1.S1_at	CV271402	hypothetical protein	-	6e-82	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.37	7e-180	630	PtpAffx.10990.2.S1_a_at	BI068838	hypothetical protein	-	7e-40	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.37	7e-180	630	PtpAffx.10990.2.S1_at	BI068838	hypothetical protein	-	7e-40	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	2e-4	48	PtpAffx.206726.1.S1_at	pmrna13352	-	-	1e-4	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	3e-3	44	Ptp.6774.1.A1_s_at	CV266335	-	-	4e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	3e-3	44	Ptp.2633.1.S1_at	CK095904	hypothetical protein	-	2e-75	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selecteFP Browser (expression)
0.14	1e-2	42	Ptp.4360.1.S1_s_at	BU831376	hypothetical protein	-	4e-60	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.219815.1.S1_at	pmrna35935	hypothetical protein	-	5e-12	At5g03720	AT-HSFA3	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.37890.1.A1_at	CX656513	hypothetical protein	-	6e-7	At1g64460	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	2e-71	270	Arabidopsis thaliana	At1g67280	843048	lactoylglutathione lyase, putative / glyoxalase I, putative	F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	5e-5	50	Glycine max	Gma.5683.2.S1_at	CA935387	-	-	7e-75	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select
0.33	1e-40	167	Hordeum vulgare	Contig4938_s_at	Contig4938	-	-	8e-47	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select
0.32	1e-55	218	Oryza sativa	Os.22487.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	8e-34	145	Triticum aestivum	Ta.23813.1.S1_at	CK157489	-	-	2e-37	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select
0.45	2e-155	547	Vitis vinifera	1616888_at	CF403623	similar to lactoylglutathione lyase, putative / glyoxalase I, putative	-	3e-73	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select
0.39	3e-47	188	Zea mays	Zm.17590.1.A1_at	CK144918	hypothetical protein LOC100191237	-	3e-46	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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