CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.1076.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.1076.1.S1_at CK093557 - - 2e+0 At5g37670 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI) S.X. H.G.
0.83 97.0 PtpAffx.218045.1.S1_at pmrna33557 hypothetical protein - 5e-1 At1g23860 RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21) S.X. H.G.
0.83 97.0 PtpAffx.216070.1.S1_at pmrna30631 - - 2e-1 At5g38610 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.80 96.0 PtpAffx.218897.1.S1_at pmrna34642 hypothetical protein - 1e+1 At5g22440 60S ribosomal protein L10A (RPL10aC) S.X. H.G.
0.73 93.6 PtpAffx.37795.1.A1_at CV238973 - - 1e+0 At4g00305 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.73 93.6 PtpAffx.222924.1.S1_at pmrna40652 hypothetical protein - 1e+1 At3g01070 plastocyanin-like domain-containing protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.0 100.0 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.0 96.6 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9 92.5 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5 90.9 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.3 81.0 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.1 78.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 1e-69 264 PtpAffx.6780.1.S1_s_at CK115423 - - 2e+0 At1g70850 MLP34 (MLP-LIKE PROTEIN 34) C.G. S.X.
0.35 7e-56 218 Ptp.1076.2.S1_at CK090355 - - 7e-2 At2g36440 unknown protein C.G. S.X.
0.14 1e-42 174 PtpAffx.220310.1.S1_at pmrna36680 hypothetical protein - 4e-1 At4g29850 unknown protein C.G. S.X.
0.14 1e-42 174 PtpAffx.220310.1.S1_x_at pmrna36680 hypothetical protein - 4e-1 At4g29850 unknown protein C.G. S.X.
0.13 2e-40 167 PtpAffx.217648.1.S1_at pmrna32998 hypothetical protein - 4e-1 At4g29850 unknown protein C.G. S.X.
0.13 6e-38 159 PtpAffx.221697.1.S1_at pmrna38714 hypothetical protein - 4e-1 At4g29850 unknown protein C.G. S.X.
0.18 2e-31 137 PtpAffx.5514.4.A1_at CV228069 - - 7e-1 At4g01895 systemic acquired resistance (SAR) regulator protein NIMIN-1-related C.G. S.X.
0.09 3e-27 123 PtpAffx.249.399.A1_at CV254403 - - 2e+0 At3g12660 FLA14 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 14 PRECURSOR) C.G. S.X.
0.08 2e-22 107 PtpAffx.249.252.A1_at CV262905 hypothetical protein - 9e-3 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At5g37670 833746 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI) F:molecular_function unknown;P:response to heat;C:unknown;BPOFAM - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.psMA012xA22f_at PsAffx.psMA012xA22f - - 5e+0 At1g15385 unknown protein C.G. S.X.
0.04 5e-2 38 Hordeum vulgare HA27E07r_at HA27E07r - - 4e-1 At3g03660 WOX11 (WUSCHEL related homeobox 11) C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.4966.1.S1_at - - - 0 C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.26835.1.A1_at CD491386 - - 5e+0 At5g12140 ATCYS1 (A. thaliana cystatin-1) C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1621957_at CF511100 - - 3e-1 At5g27450 MK (MEVALONATE KINASE) C.G. S.X.
0.02 3e+0 32 Zea mays Zm.9908.1.A1_at CF054801 hypothetical protein LOC100277932 - 1e-37 At1g22840 CYTC-1 (CYTOCHROME C-1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage