Gene omics information

Query gene ID	Ptp.1041.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	86.0	Ptp.1041.1.S1_at	CK090202	hypothetical protein	-	3e-45	At1g64680	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.91	99.2	PtpAffx.135079.1.S1_s_at	DN496393	hypothetical protein	-	1e-19	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.204053.1.S1_x_at	pmrna7991	hypothetical protein	-	2e-30	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	S.X.	H.G.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.138160.1.S1_s_at	AJ767883	hypothetical protein	-	3e-29	At1g64680	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.86181.1.S1_at	BI126733	-	-	4e-16	At1g54520	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.35031.1.S1_at	BU810466	hypothetical protein	-	9e-19	At1g55480	binding / protein binding	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.4	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.1	96.8	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.7	96.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.6	96.2	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1	95.5	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6	94.5	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	1025	PtpAffx.138160.1.S1_s_at	AJ767883	hypothetical protein	-	3e-29	At1g64680	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.68	0	1025	PtpAffx.138160.1.S1_at	AJ767883	hypothetical protein	-	3e-29	At1g64680	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e-1	38	PtpAffx.29939.1.A1_at	CV275765	hypothetical protein	-	7e-1	At1g53625	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.91753.1.S1_at	CV255588	hypothetical protein	-	1e-22	At1g01230	ORMDL family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.63390.1.A1_at	CV242719	-	-	6e+0	At5g63000	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-1	36	PtpAffx.50002.1.A1_at	CV262610	hypothetical protein	-	7e-7	At1g07220	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.211342.1.S1_at	pmrna22234	hypothetical protein	-	1e-2	At5g60490	FLA12	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.211342.1.S1_x_at	pmrna22234	hypothetical protein	-	1e-2	At5g60490	FLA12	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e-1	36	PtpAffx.207763.1.S1_at	pmrna15444	hypothetical protein	-	7e-38	At5g05560	EMB2771 (EMBRYO DEFECTIVE 2771)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	3e-45	182	Arabidopsis thaliana	At1g64680	842776	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	3e-77	289	Glycine max	GmaAffx.5831.1.S1_at	BU549817	-	-	2e-39	At1g64680	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Hordeum vulgare	EBes01_SQ003_N19_at	EBes01_SQ003_N19	-	-	2e-1	At5g57850	aminotransferase class IV family protein	C.G.	S.X.	Please select
0.14	2e-26	121	Oryza sativa	Os08g0114100	AK099560.1	-	Conserved hypothetical protein	4e-27	At1g64680	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Triticum aestivum	Ta.7381.2.S1_a_at	BJ212615	-	-	1e+1	At5g53780	unknown protein	C.G.	S.X.	Please select
0.45	6e-81	299	Vitis vinifera	1612680_at	BM437446	-	-	3e-27	At1g64680	unknown protein	C.G.	S.X.	Please select
0.15	2e-4	46	Zea mays	ZmAffx.962.1.S1_at	AI833777	-	-	3e-22	At1g64680	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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